Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1325 ATGTCTGTTTCTCCTCGGACTGTGGTTGTCGCTCTATCCTCTTCACCCGACATACCCTCGTCCTCGCCTTTTACCTGATTAGATATGAAGCTTGAGTTGGGTTTAGGAGGTGTGTTGTGGAATGATGAAGAAAAAGCCATGGTTGCATCGGTTCTGGGAAATCGAGCTTTTGAATACTTGATTACAAACCCTGCGGCGAACGACAATTTGTTAATGACTGTCGGAAGCGACGAAAGTTTGCAGAACAAGCTTTCGGATCTCGTGGACCGTCCAAACGTATCGAATTTCAGCTGGAACTATGCGATTTTCTGGCAAATATCACAGTCAAAGAAATCTGGGGATTGGGTTTTGGGTTGGGGAGATGGATGTTGCAGAGAACCCAAGGGAGAAGAAGGAGGAGGAGGAGTTAGAGGGCTTCTTACTCTTAGCCTGGAAAAAGATGAGATGCAGCAGAGGATGAGGAAAGGGGTGCTTCAGAAGCTTCACACAACATTTGGGGGTTCTGATGAAGACAATTATGCCTTTGGATTAGATAGGGTTACTGATACAGAGATGTTCTTTCTGGCTTCCATGTACTTCTCCTTCCCTCGCGGCCATGGGGGGCCTGGTAAATGCCTTGCTTCAGGGAAGCATGTGTGGTACTCTGATGCACTTAGCTCTGATTATTGTGTGAGATCGTTTTTGGCAAAATCAGCTGGAATTCAGACCATAGTTTTGGTCCCTACTGACATAGGAGTGGTGGAATTAGGCTCTGTGAGGATGGTAGGAGAGAGCTCAGCATTGTTGCAGGTGATAAAATCTGAATTCTCTACACAGATGGCAATTCCTAGGGTTTCCCCACTATCGCCATTGCCTGTTGTGATGAATGAGAAGCGAGATGAAAATGGTATCTTTTCTGGCTTGCCTGTTGGGGATAAGGTGGAGGGAGTTCCGAAGATTTTTGGGCAAGACTTGAACTCGTTAAACACTAGTCGTCCCCATTTTAGGGAGAAGCTTGCTGTGAGGAAAATGGAAGAGAGGCCTTGGGCAGGTCATAGTCAGCCCAATGGCAGTAGTATTAGCTTTCCAAGTGCGCATAACCGTATTCATGGATCGAGTTGGGCTGCTAATCAAGGTGGGAAACAGGCGAGCCCAACGGAGATTTATCCTTCAAGGTCCTCTGGTTGCAAAGCTTCGGAGGGAGTTAACCGGTTCAGGCAAGACTTTCGGCTTAGCAACTACCAACCCCAAAGGCAGGTGCAAATGCAAATTGATTTCTCCGGAGCCACTTCAAGGCCTTCTGTGAGACCAATCAATGCTGAATCAGAGCTATCTGATGTTGAAGCTTCATGTAGAGAAGAGCAGCTGGGTGCAACAGATGAAAGGAGGCCAAGGAAACGGGGTAGAAAGCCTGCCAATGGAAGAGAAGAACCCTTGAATCACGTGGAAGCGGAGAGGCAGAGGCGTGAGAAGCTGAATCAACGGTTCTATGCTCTTAGATCTGTTGTGCCCAATATATCCAAGATGGACAAGGCTTCTTTGCTAGGAGATGCCATTGCCTATATCCATGAGCTTCAAGCAAAACTCAAGATCATGGAATCTGAGAGAGGTCCATGTGGAAACACTTCGACGGATCTATCGACATCAGTGGCTGATCCAAAAGTAGAAAATCACAATCAAGCTACTAATGTTGATATTCAAGCTACCCAGGATGAGGTAATAGTAAGGGTGATCAGCCTTCTCAATGCTCATCCTATTTCAAGGGTTCTCCAGAAGTTCAAAGATGCACAAATTAGTGTTGTTGAGTCGAAATTTACAACTGCAAATGACACCATCTTCCATTCATTTGTAATCAAGTCTCAAGGATCTGAGCAGCTGACGAAGGAGAAGTTGATTGCAGCATTTTCTTGA 1890 0.4608 MSVSPRTVVVALSSSPDIPSSSPFTXLDMKLELGLGGVLWNDEEKAMVASVLGNRAFEYLITNPAANDNLLMTVGSDESLQNKLSDLVDRPNVSNFSWNYAIFWQISQSKKSGDWVLGWGDGCCREPKGEEGGGGVRGLLTLSLEKDEMQQRMRKGVLQKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGHGGPGKCLASGKHVWYSDALSSDYCVRSFLAKSAGIQTIVLVPTDIGVVELGSVRMVGESSALLQVIKSEFSTQMAIPRVSPLSPLPVVMNEKRDENGIFSGLPVGDKVEGVPKIFGQDLNSLNTSRPHFREKLAVRKMEERPWAGHSQPNGSSISFPSAHNRIHGSSWAANQGGKQASPTEIYPSRSSGCKASEGVNRFRQDFRLSNYQPQRQVQMQIDFSGATSRPSVRPINAESELSDVEASCREEQLGATDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYIHELQAKLKIMESERGPCGNTSTDLSTSVADPKVENHNQATNVDIQATQDEVIVRVISLLNAHPISRVLQKFKDAQISVVESKFTTANDTIFHSFVIKSQGSEQLTKEKLIAAFS 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1325 629 Pfam Helix-loop-helix DNA-binding domain 473 519 IPR011598 GO:0046983
Lele39g1325 629 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 469 518 IPR011598 GO:0046983
Lele39g1325 629 MobiDBLite consensus disorder prediction 345 431 - -
Lele39g1325 629 Gene3D - 462 530 IPR036638 GO:0046983
Lele39g1325 629 MobiDBLite consensus disorder prediction 339 480 - -
Lele39g1325 629 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 472 533 IPR036638 GO:0046983
Lele39g1325 629 CDD bHLH_AtAIB_like 466 542 - -
Lele39g1325 629 FunFam Transcription factor bHLH13 462 535 - -
Lele39g1325 629 MobiDBLite consensus disorder prediction 439 480 - -
Lele39g1325 629 PANTHER MYC 69 627 IPR045084 GO:0003700|GO:0006355
Lele39g1325 629 SMART finulus 475 524 IPR011598 GO:0046983
Lele39g1325 629 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 80 269 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1325 Lele-ChrLele39 21671864 21674005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1325 33 629 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 49.759 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele39g1325 bHLH-MYC_N 2.2e-51 CL0161