Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1319 ATGGGTTGGGATGCTTCTTCAATCTCCCTCTCTCAAAGTACCTTCATGCAGTTTCCATATCATTCAGGCTTCACTGTTGAAAATACATCCTTAACAGAATCTGAGCTCAATGGCTTTATCAAATCCCTTGAAAATTTGCCTGGCTTAGAAGCTATTATCAACATAAAAAAGACACGGATTCTTGCAGCGATTGATCTGCTCAGTGAAGTTAATAGTCTACACTCATCTTCTGCATATCAAAGTCTCGAAGAGCCTGGACGAAGGAGTGAGTGTGAAAAAACCAGTGAGATTCATGGCTTCTCTCTCTGTGGTTACAATTATGATGACTCTGATAGCTTGGAGAGTCCTAGAATTCAGGGATACCTTCAATCAAATATAAAAGCAGAACATCCATTTACTTTTGCGATGATTAGAGATAATAAAGCTAAATACAGAATAAAACTAAATAAATCAGCAATATGGTTTTGGGTGGGATTAAGGTTTCAGCAACTGCTTTTTGCCCGGACTTTTGGTAGGGTTGCAACTGCAGAAGAGTTGATAGTTAACTCAAGGTTGTTTGTATGGGCTTACCACTCTGATTGCCAAGAAAGTTTGTTTGGCTCTATTGTACCTGACGAACCATCTTGGAAAGAAATGCAAGCTTTGGGTATTGGTTTTTGGTTTGCTAATGGACCTCAATTGCGTGCTAGGATGGAGAAACTGGCAAGGGCACAGTATTTGAAGAACAAAAATCCTAAGGACTGTGCACTACTATATATTGCACTAAATAGGACTCAAGTTTTGGCTGCCCTTCTCAAAACTAGCAAGGATGAGAAAGACAAGCCTCTAGTGGGATTTCTCTCGCGCAATTTTCATCTTGAAGCATTGGAGTGCTTCTCGTCTTCTCCGAGCATGGTCGAGACTGCAGATCAAGGGAGTGAGTTGGGTGCTGGAAATGAGGAACTATTGGATATTTTTAATCCGTTGCCAAGAAAATCTGCTAACTGGCTTTCTGCTGACATCCCTTCTGGTAATAAATCAGCTCATTTGTTGTCTGAGGCGGATTGGCCACAAGATGGGTGGGCAAGTTCTGAATCCACCCCAGCACCAACATATGTTTCCCCCGGTGTTGGTCTTGGGAGTAAGAAAGTGGCCCACCTTGGGCTGGGTAGAGCCACAGTTGGTGTGGGCCTTTCAGCAAGGCCTAGCAGAGACTTGACAGTTGGTGGAACTTTTGGCATTCCCAGCTATGCCGGAACTGGGGCTGCTAAATTAGGTTGGGAAATTCAAGAGGACTTTGAAGATTTAGTCGATCCACCAGCAACTGTGGAAAACATAAGTACAAAGGGCGTAATCCAGTCATCCATTGAGGCCCCTCTTTTTGGTTGGTTCAAGCAATACACACCTTTACCTGTGGGAGGTATGAAATATTCAGTTGATTTACATATTAATGTGGCTGAACCTTTCAACAAGGATAAAGCTAAAGCTACGTATGGAGTTCTGCTTGCTGCTAATGTACCTCCGCCTTATGCTTTAGCGTCTGTATCAGCTTTAAAGTTTGATCACTATGGACACCGGTTTGTAAGTGCAGCAGTAGATGGAACTGTCTGCGCATGGCAGCTGGAGGTAGGAGGAAGGAGCAATATTCGTCCAACAGAATCATCCCTCTTCTTCAATGGTCATGCATCGATTGGCTTAGGTTTATTTATGGTGCTGACTTTTGCTCTCTCTTGTGAAGGTGGTGCTCGCTCCATTTGTGTGTTAGATAATGAGGTAGGAAGTGGTTCTATTTCCCCTCTTATTGTGACTGGTGGTAAAAATGGTGACGTTGGAATTCACGACTTCCGTTACATAGCTACTGGAAAAGCTAAAAGGCACAGGTATGCTGATAATGGCGAACAAAGAACCCCCAAGTCTTCGAATTCTGACAAGGACAAGAATGTAAATGGGATGCTTTGGTATATTCCGAAGGCTCACGCAGGGAGCATCACAAAAATAGCTGCCATCCCAAATACCAGCTTGTTTTTTACTGGAAGTAAGGATGGAGATGTCAAACTCTGGGATGTCAAGAATATTATATCATATATCCAAGACGTTTCTAATGGTTTCCTTTCGTGTGGTGGGGATGGAAATGTAAAGTTGTCTCTACTCTCTACTGTTGATGCAGGATTTAAACGGCGTCGTACCACTGCTAAACTGAAAACTATCCCAATTCCAAATTCTTCATCTGCTTCAATAGATTTTCTTCAGCCTGATCTAGAACCATCCAATTGCCTCTCTTCCTCTAATTTCATTCCACTATACCCACTTCCTTGTCTGAATCTATGA 2307 0.4265 MGWDASSISLSQSTFMQFPYHSGFTVENTSLTESELNGFIKSLENLPGLEAIINIKKTRILAAIDLLSEVNSLHSSSAYQSLEEPGRRSECEKTSEIHGFSLCGYNYDDSDSLESPRIQGYLQSNIKAEHPFTFAMIRDNKAKYRIKLNKSAIWFWVGLRFQQLLFARTFGRVATAEELIVNSRLFVWAYHSDCQESLFGSIVPDEPSWKEMQALGIGFWFANGPQLRARMEKLARAQYLKNKNPKDCALLYIALNRTQVLAALLKTSKDEKDKPLVGFLSRNFHLEALECFSSSPSMVETADQGSELGAGNEELLDIFNPLPRKSANWLSADIPSGNKSAHLLSEADWPQDGWASSESTPAPTYVSPGVGLGSKKVAHLGLGRATVGVGLSARPSRDLTVGGTFGIPSYAGTGAAKLGWEIQEDFEDLVDPPATVENISTKGVIQSSIEAPLFGWFKQYTPLPVGGMKYSVDLHINVAEPFNKDKAKATYGVLLAANVPPPYALASVSALKFDHYGHRFVSAAVDGTVCAWQLEVGGRSNIRPTESSLFFNGHASIGLGLFMVLTFALSCEGGARSICVLDNEVGSGSISPLIVTGGKNGDVGIHDFRYIATGKAKRHRYADNGEQRTPKSSNSDKDKNVNGMLWYIPKAHAGSITKIAAIPNTSLFFTGSKDGDVKLWDVKNIISYIQDVSNGFLSCGGDGNVKLSLLSTVDAGFKRRRTTAKLKTIPIPNSSSASIDFLQPDLEPSNCLSSSNFIPLYPLPCLNL 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1319 768 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 649 684 - -
Lele39g1319 768 ProSiteProfiles Trp-Asp (WD) repeats profile. 649 684 IPR001680 GO:0005515
Lele39g1319 768 MobiDBLite consensus disorder prediction 619 638 - -
Lele39g1319 768 Gene3D - 505 730 IPR015943 GO:0005515
Lele39g1319 768 PANTHER RABCONNECTIN-RELATED 342 710 - -
Lele39g1319 768 SMART WD40_4 544 607 IPR001680 GO:0005515
Lele39g1319 768 SMART WD40_4 642 681 IPR001680 GO:0005515
Lele39g1319 768 SMART WD40_4 498 533 IPR001680 GO:0005515
Lele39g1319 768 Pfam RAVE protein 1 C terminal 142 285 IPR022033 -
Lele39g1319 768 SUPERFAMILY WD40 repeat-like 507 712 IPR036322 GO:0005515
Lele39g1319 768 MobiDBLite consensus disorder prediction 619 635 - -
Lele39g1319 768 Pfam WD domain, G-beta repeat 649 681 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1319 Lele-ChrLele39 21618087 21630541 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1319 39 21618087 21630541 Lele39g1319 39 21618087 21630541 ECH
Lele37g0108 37 862039 875256 Lele39g1319 39 21618087 21630541 hybridization
Lele38g0111 38 849834 862772 Lele39g1319 39 21618087 21630541 hybridization