Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1313 ATGGGAAGAGCTCCTTGCTGTGCAAAAGTTGGGTTGCACAGAGGACCTTGGACACCTAAAGAAGACGCATTGCTCACCAAGTACATCCAAACTCATGGTGAAGGCCAATGGCGATCCTTACCTAAACGAGCTGGGCTTTTGAGGTGCGGAAAAAGTTGCAGGCTGAGATGGATGAACTATCTGAGACCAGATATAAAGAGAGGCAACATAACACCAGAAGAAGAAGATCTCATAATCAGAATGCATTCTCTTCTGGGGAATCGATGGTCTCTCATTGCGGGAAGATTGCCTGGCAGAACAGATAACGAAATCAAAAACCACTGGAACACTCATCTCAGCAAAAGGCTAAGGAATCAAGGAACCGACCCATTCACTCAGAAGAAGCTCATCTCCTCCCTACCTCATGATAACAGTTCCAAGAAGAAAGCGAGTAAAAAGAAGAAGAAAGGAAAGGCAAACGAGAATAATAATGGAGAACGAGAAGAGAAGGATGAAGAGAAGAAGACGATAGTGTATCTGCCTAAGCCAATCAGAATCACGGCCAGTTTGTCTTCTTCGATTCCCAGAAGTGACAGTGACCAGAACTTGAACTCGTTCGATTCCAACTCAGCGAGTGGATCCACGAGTCAAGAGAAGGAGGAGGAAGAAAAGAACCGAGGGAACGTTCTTTGGGAGGAGAATAATAATAATAATAATAGTAACAATAACTATAGTAATTACTATGATTATAACTGTACTTATGGTGGTGACGAAGAAGATCATAACAATAATGGGTTTGTGGGGACGTTTCTTGAGGAAGAGCATGAGTTGGTCAACGGGTCGGACATGGAGGGGCAATCAGAGTTTCCGACGTCGGCGGAACAACACGGGACGCTGGAGAAGCTGTACGAGGAATACTTCCAGCTGTTGAATAACCAAGAAAACCAAGAGGAGCTAGAATCGTTTGCTGAATCCTTGCTGGTTTGA 966 0.4451 MGRAPCCAKVGLHRGPWTPKEDALLTKYIQTHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEEDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNHWNTHLSKRLRNQGTDPFTQKKLISSLPHDNSSKKKASKKKKKGKANENNNGEREEKDEEKKTIVYLPKPIRITASLSSSIPRSDSDQNLNSFDSNSASGSTSQEKEEEEKNRGNVLWEENNNNNNSNNNYSNYYDYNCTYGGDEEDHNNNGFVGTFLEEEHELVNGSDMEGQSEFPTSAEQHGTLEKLYEEYFQLLNNQENQEELESFAESLLV 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1313 321 Gene3D - 14 66 - -
Lele39g1313 321 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 231 - -
Lele39g1313 321 SMART sant 66 114 IPR001005 -
Lele39g1313 321 SMART sant 13 63 IPR001005 -
Lele39g1313 321 MobiDBLite consensus disorder prediction 183 208 - -
Lele39g1313 321 FunFam MYB transcription factor 68 129 - -
Lele39g1313 321 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele39g1313 321 MobiDBLite consensus disorder prediction 183 231 - -
Lele39g1313 321 MobiDBLite consensus disorder prediction 129 168 - -
Lele39g1313 321 CDD SANT 71 112 IPR001005 -
Lele39g1313 321 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele39g1313 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele39g1313 321 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele39g1313 321 MobiDBLite consensus disorder prediction 150 168 - -
Lele39g1313 321 Gene3D - 69 157 - -
Lele39g1313 321 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele39g1313 321 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lele39g1313 321 CDD SANT 16 61 IPR001005 -
Lele39g1313 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele39g1313 321 Coils Coil 292 312 - -
Lele39g1313 321 FunFam Myb transcription factor 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1313 Lele-ChrLele39 21572975 21574155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1313 4 129 MYB Transcription Factor Family AT3G13540 73.016 8.95e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele39g1313 Myb_DNA-binding 7.4e-14 CL0123