Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1309 ATGAGCTTCTCGTTAGAGTCCAACGGGCGGCACAAATCAGCGAATGATTCTGAAACATTTTATTGCCCCATAACCAAGCAAGTTATGGAGGACCCTGTTGAAACTCCATCAGGGAAGGCATCTGAGAAAAGTGCCGTAGAAAATGGTTTGCTGAAAGAAAAACTCCATTCCCAAGATGATGACGACCAAGTTCTACATTGTCTGGGAACTATACAGGATTTGTGTGAACAAAGTGATCTGCACAGGGAATGGCTGATACAGGAGAATTACTTACCAGTTCTTATCCTGATTCTCGGCGCCAAAAACCACGATGCCAGAACCCGCGCTCTAGCCATCCTTAACATGTTGGCAAAGGATAATGATGATGCAAAGGAAAGAATTGCCAACATTGATAATGCAATTGTATCTATTGTTCATTCACTTGGACGCCCTGTGGGCGAAAGGAAGTTGGCAGTGGATTTACTACTGGAATTATCCAAATATGATTTGGTGCTAGAGGAAATTGGGAAGGTTCAAGGATGCATACTACTGCTTGTGACTATGTCGAGCGGTGATGATGATGATGATGAAGCTGCCAGAAATGCAAAGGAGCTTTTGCAGAATCTCTCATACTCTGATAACAATGTTTTGAAGATGGCAAGGGCTAATTATTTTCACCATCTTGTACACCGTCTTTCCACAGGTTTAATCATCTTAGGGTTTTGGAAAGCTTCATATTCTGTTCATTTTTTAGAAAGTGCCTTAACCCACCTGTTCCTTTATGTAGGACGGGATGATGTGAAGATGATTATGGCGAAAGCTCTTGCGGAAATGGAGTTAACCAACCTGAATAAAGCATCCTTGTTTGAAGGTGGTGTGCTGGGTCCTCTTCTGCATTTAGTTTCACATTCTGATATTCAAGTGAAAACAGTGGCCATTACGGCTTTAAGGAACCTATCAAGTTTAAAGAAAAATGGACAGAAGATGATTCAACAAGGTGTAGTACGCCCTATACTTGACCTTCTATTCCAGCCTGGCTTGCTATGCTTAAGTCTAAAGGAACACTTATCAGCCATAATCATGCAACTCGCGGCTTCAACCGTCTCTAAAGATGGCCAAGCCCCAACTTCATTATTGTTAGAATCTGATCATGAAGATGCTTTAAAACTCTTCTCTTTAATTAGTTTCACGACGCCCAATGTCCAGCAAAACATTTTACGGACCTTCTATGCATTGTGTCAGTCCCCATCAGCCTCAGTTATCAGGAGCAAGCTAATTATAGAGTGCTCAGTTTTTGAAGTTTTGGTTCAGCTCTGTAAGCAGGAAAATCTAAACCTAAGGGCAAGTGCTGTGAAGCTATTTGCCTGCTTGGTAAGCGAAGAAGCCAACATACCGGAAAGCGAAAATCAGAAATGCGCTGAAGCTATGCTCCAGATCCTGAGATCTTCTTCAGATGAAGAGGAAATTTCTTCTGCTCTGGGCATAGTACGTTATCTTCCAAAAGTTCACCAGCTCACACAGTGGCTTCTCGATGCCGGTGCACTTCCTATCATATATAATCATCTCCAAGATTGGAAGAACATAATAATAGATTGCCAAAAAAAGAGCAAGTTAATAGAGAATGCCATTGGGGCCTTGAGCCATTTCACTGTTTCAACACACCCAGAATGGCAAAAGAGAGCTGCTGAGACTGGTGTTATATCTGTTCTAGTTCAGTTTCTTGCATGTGGAACCTCATCAACAAAACAAGAAGCTGCATCATCTCTAGCTCAATTCTCAAAGAATTCACTTGCTCTGAGCATGCCGGTATCAAAGCCGAAGAAGGGCCTTTGGTGTTGTTTCTCATCTCCAACACAAATTAGCTGCTTGGTTCATGGAGGAATATGCACCGTGAAGTCATCATTTTGCCTTGTTGAGGCTGATGCAGTGAAGCCATTAGTGAGGACACTTGGGGAATCTGATCCAGGAGCTTCTGAGGCTTCTTTAGACGCATTAATGACATTAGTTGAAGGAGAAAGACTTCAAAGTGGTAGTAAAGTGCTTGCAGAAGCAAATGCTATACCGGTGATAATAAAATGTCTTAATTCCACATCTCATGGATTACAGGAGAAATCGCTACAAGCTTTGGAAAGGATTTTTCGGCTACTCGAGTTCAAACAGTTGTATGCAGCCTCAGCTCATATGCCTCTAGTGGATTTAACTCAGAGAGGGAATGATAGCGTGAGATCTCTGGCAGCCAGAGTTTTGGCACATTTGAACGTGCTTCACTATCAGTCTTCTTATTTCTAA 2268 0.422 MSFSLESNGRHKSANDSETFYCPITKQVMEDPVETPSGKASEKSAVENGLLKEKLHSQDDDDQVLHCLGTIQDLCEQSDLHREWLIQENYLPVLILILGAKNHDARTRALAILNMLAKDNDDAKERIANIDNAIVSIVHSLGRPVGERKLAVDLLLELSKYDLVLEEIGKVQGCILLLVTMSSGDDDDDEAARNAKELLQNLSYSDNNVLKMARANYFHHLVHRLSTGLIILGFWKASYSVHFLESALTHLFLYVGRDDVKMIMAKALAEMELTNLNKASLFEGGVLGPLLHLVSHSDIQVKTVAITALRNLSSLKKNGQKMIQQGVVRPILDLLFQPGLLCLSLKEHLSAIIMQLAASTVSKDGQAPTSLLLESDHEDALKLFSLISFTTPNVQQNILRTFYALCQSPSASVIRSKLIIECSVFEVLVQLCKQENLNLRASAVKLFACLVSEEANIPESENQKCAEAMLQILRSSSDEEEISSALGIVRYLPKVHQLTQWLLDAGALPIIYNHLQDWKNIIIDCQKKSKLIENAIGALSHFTVSTHPEWQKRAAETGVISVLVQFLACGTSSTKQEAASSLAQFSKNSLALSMPVSKPKKGLWCCFSSPTQISCLVHGGICTVKSSFCLVEADAVKPLVRTLGESDPGASEASLDALMTLVEGERLQSGSKVLAEANAIPVIIKCLNSTSHGLQEKSLQALERIFRLLEFKQLYAASAHMPLVDLTQRGNDSVRSLAARVLAHLNVLHYQSSYF 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1309 755 SUPERFAMILY ARM repeat 50 745 IPR016024 -
Lele39g1309 755 SMART arm_5 494 544 IPR000225 GO:0005515
Lele39g1309 755 SMART arm_5 315 358 IPR000225 GO:0005515
Lele39g1309 755 SMART arm_5 274 314 IPR000225 GO:0005515
Lele39g1309 755 SMART arm_5 78 118 IPR000225 GO:0005515
Lele39g1309 755 SMART arm_5 623 663 IPR000225 GO:0005515
Lele39g1309 755 SMART arm_5 667 707 IPR000225 GO:0005515
Lele39g1309 755 SMART arm_5 547 587 IPR000225 GO:0005515
Lele39g1309 755 Coils Coil 113 133 - -
Lele39g1309 755 SUPERFAMILY RING/U-box 15 54 - -
Lele39g1309 755 Gene3D - 37 145 IPR011989 -
Lele39g1309 755 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 51 755 - -
Lele39g1309 755 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 285 327 IPR000225 GO:0005515
Lele39g1309 755 Gene3D - 146 594 IPR011989 -
Lele39g1309 755 Pfam U-box domain 18 52 IPR003613 GO:0004842|GO:0016567
Lele39g1309 755 Gene3D - 614 751 IPR011989 -
Lele39g1309 755 Pfam Armadillo/beta-catenin-like repeat 281 314 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1309 Lele-ChrLele39 21534716 21537165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1309 15 755 U-box Gene Family AT1G76390 24.572 2.76e-43 166