Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1303 ATGTTAGATCATCATCGTCACCTTGCTATGGAATATTCTCATTTAGCAGAAGTTGCAGAAACTGCAGAAGCAGCTTATAGCAGCAGCACAGGAATCACGAGGAAGAGGAAGGGCAACAAAATCCAGAGAAGGTTCAGTGATGATCAGATCAGATCACTGGAATCCATGTTTGAGACAGAGTCAAGGCTTGAGCCGAGGAAGAAGGTTCAGCTTGCAAGAGAGCTTGGGTTACAGCCGAGGCAGGTTGCTATTTGGTTCCAGAACAAGAGGGCAAGATGGAAATCGAAGCAGATCGAAAGAGACTATAGCATACTTAGAGCTAATTATACCAGCTTGGCTTCAAGGTTGGAAGCTCTCAAAAAGGAGAAGGAGGCATTGCTAATTCAGTTGCAGAAGCTGAATGATGTAATACAGAAGCCAAACGAGGAAGAAGCTGAGGGCCATAATAAGACACAAGTGAAACCAGCGAACAGCATGGACAGTGTATCAGAGAATGGAGAAAACGTTAAAGTGAAAGCTGAGGAAAATCCAAGCTCAACAACAATGGAGAGATCACCGGATCACGTGCTGGGTGTTCTCTCAGATGATGACAGCAGCATAAAAGCAGAATACTTTGGGCTTGAAGATGAAGCCAGTCTTCTGAATTTTGTGGAGCAAGCAGATGATTCCCTGACATCAGCGGAAGATTGGCGTACTTTTGATTCTGATGAACTCTTAGCCCAATCAGGTGTTGGTTACCAGTGGTGGGACTTCTGGTCATGA 762 0.4488 MLDHHRHLAMEYSHLAEVAETAEAAYSSSTGITRKRKGNKIQRRFSDDQIRSLESMFETESRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQIERDYSILRANYTSLASRLEALKKEKEALLIQLQKLNDVIQKPNEEEAEGHNKTQVKPANSMDSVSENGENVKVKAEENPSSTTMERSPDHVLGVLSDDDSSIKAEYFGLEDEASLLNFVEQADDSLTSAEDWRTFDSDELLAQSGVGYQWWDFWS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1303 253 CDD homeodomain 40 97 IPR001356 GO:0003677
Lele39g1303 253 Pfam Homeobox associated leucine zipper 96 136 IPR003106 GO:0006355|GO:0043565
Lele39g1303 253 SMART HOX_1 39 100 IPR001356 GO:0003677
Lele39g1303 253 Coils Coil 102 136 - -
Lele39g1303 253 Pfam Homeodomain 43 94 IPR001356 GO:0003677
Lele39g1303 253 MobiDBLite consensus disorder prediction 142 189 - -
Lele39g1303 253 ProSitePatterns 'Homeobox' domain signature. 71 94 IPR017970 GO:0000981|GO:0006355
Lele39g1303 253 MobiDBLite consensus disorder prediction 151 165 - -
Lele39g1303 253 SUPERFAMILY Homeodomain-like 26 97 IPR009057 -
Lele39g1303 253 Gene3D - 31 103 - -
Lele39g1303 253 ProSiteProfiles 'Homeobox' domain profile. 36 96 IPR001356 GO:0003677
Lele39g1303 253 PRINTS Lambda-repressor HTH signature 76 92 IPR000047 GO:0003677
Lele39g1303 253 PRINTS Lambda-repressor HTH signature 67 76 IPR000047 GO:0003677
Lele39g1303 253 FunFam Homeobox-leucine zipper protein ATHB-7 24 96 - -
Lele39g1303 253 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 37 183 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1303 Lele-ChrLele39 21474893 21475734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1303 15 253 Homeobox Transcription Factor Family AT2G46680 51.351 4.11e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele39g1303 Homeodomain 1.6e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1303 39 21474893 21475734 Lele39g1303 39 21474893 21475734 ECH