Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1300 ATGGTTTTCACTTCACGTGGTAGTGGCGCCCAATCTCCCTGTTCCCTTGGGAAACTAGACTCCCCCTCCCTCCCATTCCACTCTGCTTATTTGGACTCCCTCCTTCCCTCTCCTCTTCCGTTAAGACTCTCACTCCTCATATTAATATCACCCACCCCTCCCCCCCTTCGTCCCCTCCGTAATCCTCCCATCCCTCTCTCCCCCCAAAACGCCAAAAAGCTTCTATTTGTCCGTACACCTCCCTCCTTCATGGACGACCTCATCCTCTCCCCTTCTTCCCCTTCCTCCCTCCTCTCCTTCTCTCACTCTCCTCCTCCCCCCTCCTCCCCTCTCCAAACCAAGCTTCAATTCTTACTTCAGTCCCAGCCTCACTCCTGGCTCTACGCCATTTTCTGGCAAACCTCCCACGACGACCGCAACCGCCTCCGCTTGTCCTGGGCCCATGGTCACTTCCATGGCTCCGATCATCGTCCCCGTCATAACAACTTCGTCAAAGGTCTTGAATCTCTCGTCGACGACAACCTTAATGACGCTGAGTGGTTCTACGTCATGTCCTTGACTCGCACTTTCTCCCTCGCTCCTGATTCCTCCTCCTCCCTCCCCGCCAAGGCTTTCTCCTCCGCTTCTCCCCTCTGGTTGAATATCACCCACCACGAGCTTCAGTTTCACTGCTGCGACAGAGCCAAAGAAGCTTCCCTGCATGGGATTCAAACCCTGATCTGTGTTCCCACCACTCACGGAGTTCTCGAAATGGGTTCCTCTGAAATCATCCCCAAGAACTCCGGTCTCATCCAGCAAGTTAAATCTCTGTACGGCTCCTCGGATCTCACGGCCATCATCTCACCCCCTAATAAGCAACCCAAACAGGTTGATTTCTTGGACGTCGACGAGACCATCTCTTTTGCCGACATGGGCATTATCGCCGGCGCACCGGAAGTAGAAGATGAGAAGCCGCCGGTCAATTCCTGTAGTAAATCCCGAAAGAAGGATCCCCGTCTGCACCTCAGGTCGTATGTGGATTCAGAGCATTCGCATTCGGATTCCGACGGTCCGATAATAGAGAAGACACCGCCCAGGAAGAGAGGAAGAAAGCCCGGGCTGGGTCGCGAGGCGCCGCTGAACCACGTGGAAGCCGAGCGGCAACGCCGGGAGAAGCTGAACCACAGGTTCTACGCGCTACGCGCCGTGGTCCCGCATGTGACGAGGATGGACAAGGCGTCGCTGTTATCGGACGCCGTCTCTTACATCAACGAGCTCAAAGCCAAGATCGAGAAGCTGGAGTCGCAGCTTCAGAGGGAGCCCACCTACACGAATAGTTGCAGGAAGGTGAAGCTGGAAGACACGATGGAATCGACGGTGGAGCAGGCCGGCCCCAGCGGGCGGGGCTTCAGGCTGGGGCTGGGCGGGCTGGAGGTCGATGTGAGGATCATAGGACCGGACGCAATGATCAGAGTTCAGTCGGAGAACAGGAACCATCCCGGAGCGAAGCTGATGGACGCGCTGCGGGACTTGGAGCTTAGGGTGCACCATGCGAGCATGTCATGCGTCAAGGACTTTATGCTTCAAGACGTCGTCGTTAAGATCCCTCAGGGCCTGAGAAGCGACGAGAGCTTGATTAAGTCCTCTATTCTCAGGAGACTGGATCAGTAG 1650 0.56 MVFTSRGSGAQSPCSLGKLDSPSLPFHSAYLDSLLPSPLPLRLSLLILISPTPPPLRPLRNPPIPLSPQNAKKLLFVRTPPSFMDDLILSPSSPSSLLSFSHSPPPPSSPLQTKLQFLLQSQPHSWLYAIFWQTSHDDRNRLRLSWAHGHFHGSDHRPRHNNFVKGLESLVDDNLNDAEWFYVMSLTRTFSLAPDSSSSLPAKAFSSASPLWLNITHHELQFHCCDRAKEASLHGIQTLICVPTTHGVLEMGSSEIIPKNSGLIQQVKSLYGSSDLTAIISPPNKQPKQVDFLDVDETISFADMGIIAGAPEVEDEKPPVNSCSKSRKKDPRLHLRSYVDSEHSHSDSDGPIIEKTPPRKRGRKPGLGREAPLNHVEAERQRREKLNHRFYALRAVVPHVTRMDKASLLSDAVSYINELKAKIEKLESQLQREPTYTNSCRKVKLEDTMESTVEQAGPSGRGFRLGLGGLEVDVRIIGPDAMIRVQSENRNHPGAKLMDALRDLELRVHHASMSCVKDFMLQDVVVKIPQGLRSDESLIKSSILRRLDQ 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1300 549 Gene3D - 370 441 IPR036638 GO:0046983
Lele39g1300 549 MobiDBLite consensus disorder prediction 318 375 - -
Lele39g1300 549 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 372 434 IPR036638 GO:0046983
Lele39g1300 549 SMART finulus 376 425 IPR011598 GO:0046983
Lele39g1300 549 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 111 270 IPR025610 -
Lele39g1300 549 PANTHER MYC 103 545 IPR045084 GO:0003700|GO:0006355
Lele39g1300 549 MobiDBLite consensus disorder prediction 310 375 - -
Lele39g1300 549 CDD bHLH_AtAIB_like 368 432 - -
Lele39g1300 549 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 370 419 IPR011598 GO:0046983
Lele39g1300 549 Coils Coil 409 429 - -
Lele39g1300 549 Pfam Helix-loop-helix DNA-binding domain 374 419 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1300 Lele-ChrLele39 21432523 21434172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1300 111 528 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 34.990 9.38e-91 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele39g1300 bHLH-MYC_N 5.7e-38 CL0161