Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele39g1295 | ATGTCAGAAGGTGCAGAAGTTGATGAGCGTGTGGACTTTGATGAGGAAAACTACATGGAAGAGATGGAAGATGATGTGGAAGAACAAATATATGATGAGGGAGTGGATGGAGGTGGTGATGAAAATGAAGAGAATGTTGAGGAACATGAATATGAAGATTCAGTAGCAGAACCTTGTGGGAAAGACCAATATCCCGAAGCAGATGGCTGTGATTTTGCGACTGACTCTGTGGAAAATGAGCAAAAGCCATTCTCCATTGATGAAAATGAGAAGGAGAAACATGATGAACTTCTTGCACTTCCTCCTCATGGTTCTGAAGTCTTTATTGGTGGACTTCCTCGGGATACATGTGAAGATGATTTAAGAGAAATGTGTGAGCCAATCGGTGACATTCTTGAGGTGAGACTTATGAAAGATAGGGATACAGGAGATGTTAAGGGCTATGCATTTGTGGCATTTAAAACAAAAGAGATTGCACAAAAGGCCATTGAAGAGCTACATAACAAGGAATTTAAGGGCAAAACTTTAAGGTGTTCTGTGTCTGAAACAAAACACAGATTGTTTATTGGTAATGTTCCAAAAAGTTGGACGGAGGATGAGTTCAGGAAAGTCATCATGGGTGTTGGTCCTGGAGTTGAAAATATTGAGCTGATAAAGGACCCCCAAAATGCAAGCAGGAACCGGGGGTTTGCTTTTGTATTGTATTATAATAATGCTTGTGCGGATTATTCTCGGAAAAATATGTCAAATGCAAACTTTAAGCTGGATGGCAATACCCCCACGGTCACGTGGGCAGATCCAAAGAACGCACCTGATCATTCGGCTTCCTCACAGGTTAAAGCTCTTTATGTGAAAAACATACCTGAGAATACTACCACTGAACAACTGAAGGAACTGTTCTGTCGACACGGAGAAGTAACAAAAGTGGTCATGCCTCCTGGGAAATCTGGAGGCAAACGTGACTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAGGCAGTAAAAGAGACAGAAAAATATGAAATAGATGGCCAAGCGTTGGAAGTTGTTCTAGCAAAGCCTCAAACTGAGAAAAAAACTGATGGAGGTTATGCTTACAATCCCGGGCTTCAACCACATCCTGGGTATGGTGGTATCTCAGGAAATCTATATGGTTCTTCTGTGCGGCCTGGCTATGGTGTTACCGGTGGTTATCAACAACCAGTGATATATGGTAGGGGTCCAATGCCACCTGGAATGCAGATGGTTCCAATGGTATTACCTGATGGTCGTATCGGCTATGTCCTTCAACAGCCTGGTGCACAGATGTCGTCTCCACGACCCCAGAGGAACAATGGTAGAAGCAGTCAGCCAGGGCGAGGGGGAGGCAGCGGCAATGATGAGGGCAATCGCGGTAGAAGGTATCGACCTTATTGA | 1425 | 0.4372 | MSEGAEVDERVDFDEENYMEEMEDDVEEQIYDEGVDGGGDENEENVEEHEYEDSVAEPCGKDQYPEADGCDFATDSVENEQKPFSIDENEKEKHDELLALPPHGSEVFIGGLPRDTCEDDLREMCEPIGDILEVRLMKDRDTGDVKGYAFVAFKTKEIAQKAIEELHNKEFKGKTLRCSVSETKHRLFIGNVPKSWTEDEFRKVIMGVGPGVENIELIKDPQNASRNRGFAFVLYYNNACADYSRKNMSNANFKLDGNTPTVTWADPKNAPDHSASSQVKALYVKNIPENTTTEQLKELFCRHGEVTKVVMPPGKSGGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVLAKPQTEKKTDGGYAYNPGLQPHPGYGGISGNLYGSSVRPGYGVTGGYQQPVIYGRGPMPPGMQMVPMVLPDGRIGYVLQQPGAQMSSPRPQRNNGRSSQPGRGGGSGNDEGNRGRRYRPY | 474 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele39g1295 | 474 | MobiDBLite | consensus disorder prediction | 432 | 474 | - | - | |
| Lele39g1295 | 474 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 280 | 357 | IPR000504 | GO:0003723 | |
| Lele39g1295 | 474 | CDD | RRM3_hnRNPR_like | 279 | 357 | - | - | |
| Lele39g1295 | 474 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 185 | 267 | IPR000504 | GO:0003723 | |
| Lele39g1295 | 474 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 105 | 183 | IPR000504 | GO:0003723 | |
| Lele39g1295 | 474 | Gene3D | - | 6 | 185 | IPR012677 | - | |
| Lele39g1295 | 474 | SMART | rrm1_1 | 106 | 179 | IPR000504 | GO:0003723 | |
| Lele39g1295 | 474 | SMART | rrm1_1 | 186 | 263 | IPR000504 | GO:0003723 | |
| Lele39g1295 | 474 | SMART | rrm1_1 | 281 | 353 | IPR000504 | GO:0003723 | |
| Lele39g1295 | 474 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 186 | 266 | - | - | |
| Lele39g1295 | 474 | MobiDBLite | consensus disorder prediction | 8 | 51 | - | - | |
| Lele39g1295 | 474 | Gene3D | - | 269 | 396 | IPR012677 | - | |
| Lele39g1295 | 474 | SUPERFAMILY | RNA-binding domain, RBD | 274 | 378 | IPR035979 | GO:0003676 | |
| Lele39g1295 | 474 | SUPERFAMILY | RNA-binding domain, RBD | 102 | 269 | IPR035979 | GO:0003676 | |
| Lele39g1295 | 474 | MobiDBLite | consensus disorder prediction | 434 | 459 | - | - | |
| Lele39g1295 | 474 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 12 | 459 | - | - | |
| Lele39g1295 | 474 | MobiDBLite | consensus disorder prediction | 1 | 71 | - | - | |
| Lele39g1295 | 474 | CDD | RRM_SF | 107 | 179 | - | - | |
| Lele39g1295 | 474 | FunFam | Heterogeneous nuclear ribonucleoprotein Q isoform A | 8 | 185 | - | - | |
| Lele39g1295 | 474 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 282 | 350 | IPR000504 | GO:0003723 | |
| Lele39g1295 | 474 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 187 | 253 | IPR000504 | GO:0003723 | |
| Lele39g1295 | 474 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 107 | 177 | IPR000504 | GO:0003723 | |
| Lele39g1295 | 474 | Gene3D | - | 186 | 266 | IPR012677 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele39g1295 | Lele-ChrLele39 | 21383928 | 21387394 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele39g1295 | 107 | 444 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 25.594 | 2.27e-18 | 86.3 |