Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1292 ATGAGTATTTCTGTGAATGGACAATCTCAAGTCCCTCCAGGCTTCAGATTCCACCCCACCGAAGAGGAGCTTCTGCAGTATTACTTGAGGAAGAAGGTCTCCTTCGAGAAAATTGACCTCGATGTCATTCGTGACGTCGATCTCAACAAGCTCGAGCCATGGGATATTCAAGAGAAGTGTAAGATAGGAACCACGCCGCAAAACGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTACCCCACCGGAACGCGAACCAACCGAGCCACAGCCGCCGGATTCTGGAAAGCCACCGGCCGGGATAAGGTGATATACAGCAACGGCAAGAGGACCGGAATGAGGAAGACTCTCGTCTTCTACAAAGGCCGAGCCCCTCATGGCCAGAAATCTGATTGGATCATGCACGAATATCGATTGGACGACAACACCAGCGACACCAACATCATGTCGAATGTGATGGGAGATGGAACCCAGGAAGAAGGATGGGTGGTGTGCAGAATATTCAAGAAGAAGAACCAACTGAAAACCCTAGACTGCCCCTTAGGCTCGTCCATTATTACGGGAGAAAGCAACAGAAGAAGCCACAACATGTTCGAGTCCTGCGACGACGAAGGAGCTTTAGAGGAAATACTTCGGCAAATGGGAAGAAGCTGCAAGGAAGAGAACGAAGCTAATTACAGCAACAACAATGAAAGATTCACCCTATCAAGCTTCAACAATAACCCCGGTAATAACAGTTCTAACAACTACAATGAAAGGTTCTTGAAGCTCCCAAGCTTAGAAAGTCCAAAGTCCACAAGCTTAGAGAATAATAATAATGTGGACAGCAACAATGGGTACCACCCTATGATTCCAGAGATGGAAGGGTCCTTCACGACCGTTCATCGTCACATGGATAAATCTAACGGTGGAAGACTCGCCAACTGGGCGGCTCTGGATCGTCTAGTTGCTTCGCAGCTCAATGGACAGACCGAGTCTTCAAGGCAGCTAGCTTGTTTCAGTACTGACCCCACCAGCAGCGCCATCATGGGTTACTGCACTAACGACGTCGTTCAGGATCTACAAATGCCCACCCTGCGATCGTCCTCATCATCCACGTCAACGTCCACGCACAGAGCAGTGTACGTGAGTCCTCAAGCACAAGATTACAATAGCAGCGAGATTGACCTATGGAGCTTTGCCAGATCAGCATCATCGTTGTTGTCGTCGTCCTCGGAGCCACTGTGCCATGTGTCCAACACGTCAGTGTAA 1251 0.49 MSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSFEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRTGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTSDTNIMSNVMGDGTQEEGWVVCRIFKKKNQLKTLDCPLGSSIITGESNRRSHNMFESCDDEGALEEILRQMGRSCKEENEANYSNNNERFTLSSFNNNPGNNSSNNYNERFLKLPSLESPKSTSLENNNNVDSNNGYHPMIPEMEGSFTTVHRHMDKSNGGRLANWAALDRLVASQLNGQTESSRQLACFSTDPTSSAIMGYCTNDVVQDLQMPTLRSSSSSTSTSTHRAVYVSPQAQDYNSSEIDLWSFARSASSLLSSSSEPLCHVSNTSV 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1292 416 FunFam NAC domain-containing protein 20 174 - -
Lele39g1292 416 Gene3D NAC domain 20 175 IPR036093 GO:0003677|GO:0006355
Lele39g1292 416 SUPERFAMILY NAC domain 7 170 IPR036093 GO:0003677|GO:0006355
Lele39g1292 416 MobiDBLite consensus disorder prediction 221 251 - -
Lele39g1292 416 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
Lele39g1292 416 ProSiteProfiles NAC domain profile. 11 170 IPR003441 GO:0003677|GO:0006355
Lele39g1292 416 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1292 Lele-ChrLele39 21350956 21352557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1292 1 415 NAC Transcription Factor Family AT2G46770 54.098 7.31e-138 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele39g1292 NAM 1.4e-35 No_clan