LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele39g1292	ATGAGTATTTCTGTGAATGGACAATCTCAAGTCCCTCCAGGCTTCAGATTCCACCCCACCGAAGAGGAGCTTCTGCAGTATTACTTGAGGAAGAAGGTCTCCTTCGAGAAAATTGACCTCGATGTCATTCGTGACGTCGATCTCAACAAGCTCGAGCCATGGGATATTCAAGAGAAGTGTAAGATAGGAACCACGCCGCAAAACGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTACCCCACCGGAACGCGAACCAACCGAGCCACAGCCGCCGGATTCTGGAAAGCCACCGGCCGGGATAAGGTGATATACAGCAACGGCAAGAGGACCGGAATGAGGAAGACTCTCGTCTTCTACAAAGGCCGAGCCCCTCATGGCCAGAAATCTGATTGGATCATGCACGAATATCGATTGGACGACAACACCAGCGACACCAACATCATGTCGAATGTGATGGGAGATGGAACCCAGGAAGAAGGATGGGTGGTGTGCAGAATATTCAAGAAGAAGAACCAACTGAAAACCCTAGACTGCCCCTTAGGCTCGTCCATTATTACGGGAGAAAGCAACAGAAGAAGCCACAACATGTTCGAGTCCTGCGACGACGAAGGAGCTTTAGAGGAAATACTTCGGCAAATGGGAAGAAGCTGCAAGGAAGAGAACGAAGCTAATTACAGCAACAACAATGAAAGATTCACCCTATCAAGCTTCAACAATAACCCCGGTAATAACAGTTCTAACAACTACAATGAAAGGTTCTTGAAGCTCCCAAGCTTAGAAAGTCCAAAGTCCACAAGCTTAGAGAATAATAATAATGTGGACAGCAACAATGGGTACCACCCTATGATTCCAGAGATGGAAGGGTCCTTCACGACCGTTCATCGTCACATGGATAAATCTAACGGTGGAAGACTCGCCAACTGGGCGGCTCTGGATCGTCTAGTTGCTTCGCAGCTCAATGGACAGACCGAGTCTTCAAGGCAGCTAGCTTGTTTCAGTACTGACCCCACCAGCAGCGCCATCATGGGTTACTGCACTAACGACGTCGTTCAGGATCTACAAATGCCCACCCTGCGATCGTCCTCATCATCCACGTCAACGTCCACGCACAGAGCAGTGTACGTGAGTCCTCAAGCACAAGATTACAATAGCAGCGAGATTGACCTATGGAGCTTTGCCAGATCAGCATCATCGTTGTTGTCGTCGTCCTCGGAGCCACTGTGCCATGTGTCCAACACGTCAGTGTAA	1251	0.49	MSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSFEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRTGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTSDTNIMSNVMGDGTQEEGWVVCRIFKKKNQLKTLDCPLGSSIITGESNRRSHNMFESCDDEGALEEILRQMGRSCKEENEANYSNNNERFTLSSFNNNPGNNSSNNYNERFLKLPSLESPKSTSLENNNNVDSNNGYHPMIPEMEGSFTTVHRHMDKSNGGRLANWAALDRLVASQLNGQTESSRQLACFSTDPTSSAIMGYCTNDVVQDLQMPTLRSSSSSTSTSTHRAVYVSPQAQDYNSSEIDLWSFARSASSLLSSSSEPLCHVSNTSV	416

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele39g1292	416	FunFam	NAC domain-containing protein	20	174	-	-
	Lele39g1292	416	Gene3D	NAC domain	20	175	IPR036093	GO:0003677\|GO:0006355
	Lele39g1292	416	SUPERFAMILY	NAC domain	7	170	IPR036093	GO:0003677\|GO:0006355
	Lele39g1292	416	MobiDBLite	consensus disorder prediction	221	251	-	-
	Lele39g1292	416	Pfam	No apical meristem (NAM) protein	12	139	IPR003441	GO:0003677\|GO:0006355
	Lele39g1292	416	ProSiteProfiles	NAC domain profile.	11	170	IPR003441	GO:0003677\|GO:0006355
	Lele39g1292	416	PANTHER	PROTEIN CUP-SHAPED COTYLEDON 2-RELATED	9	263	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele39g1292	Lele-ChrLele39	21350956	21352557	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele39g1292	1	415	NAC Transcription Factor Family	AT2G46770	54.098	7.31e-138	397

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Lele39g1292		NAM	1.4e-35	No_clan

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