Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1290 ATGTCGTTTCTCAGGAATTCCCAAACCCTAGAATCACATTCGCAGCCGAGCGGCCACGGCGGGGAACAAGTCTACTGTGATCTCTGTTGCCTGAGCTTAAAAATGTCGATTGGAGAGACTGCTTGCACTTACGCGGTTCTCATCCTCCATGATGATAACATTCCGGTCACTGCCGAGAAGATATCGACCTTGGTGAAAGCGGCAAATGTTGATGTTGAATCTTATTGGCCAAGCTTGTTCGCTAAACTTGCTGAGAAGAGAAACATTGAGGATTTGGTATTGAATGCTGGGGGAGGTGGGGCTCCTGTTGCCGTTGCAGCACCAGCTGCAGCTGCTGCTGGTGGTGGTGCAGCCGCTCCTCCTCCTGCTGAGGAAAAGAAGAAGGAAGAACCCCAAGAAGAGAGCGATGATGACATGGGATTCAGCTTGTTTGATTAG 438 0.5023 MSFLRNSQTLESHSQPSGHGGEQVYCDLCCLSLKMSIGETACTYAVLILHDDNIPVTAEKISTLVKAANVDVESYWPSLFAKLAEKRNIEDLVLNAGGGGAPVAVAAPAAAAAGGGAAAPPPAEEKKKEEPQEESDDDMGFSLFD 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1290 145 MobiDBLite consensus disorder prediction 1 19 - -
Lele39g1290 145 CDD Ribosomal_P1 39 95 - -
Lele39g1290 145 Gene3D - 35 97 IPR038716 -
Lele39g1290 145 MobiDBLite consensus disorder prediction 113 145 - -
Lele39g1290 145 FunFam 60S acidic ribosomal protein P1 35 97 - -
Lele39g1290 145 Hamap 50S ribosomal protein L12 [rpl12]. 40 145 IPR027534 GO:0003735|GO:0005840|GO:0006414
Lele39g1290 145 MobiDBLite consensus disorder prediction 1 20 - -
Lele39g1290 145 Pfam 60s Acidic ribosomal protein 56 144 - -
Lele39g1290 145 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 35 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1290 Lele-ChrLele39 21328400 21329336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1290 35 145 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 56.757 1.81e-39 127