Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1286 ATGGTTCAAGTTCGAGCGTCGGGTGGAGCTCGATTTATATGCGCTATCTCTGTGCTCTTCAAAACGCCTAGACAATCGGGGGAAATGGAAGCTATTCTCTGCCTCACCCCTCCTTCCTTCTCATCATCAAGAAACAAGCTTCAATTCGCAGCTTCAGCGAAACGGTTCGCTTCATGCTCATCGTTGCTTCCTTCTTCGGTTTTTTCATTATCTCTTGGTGCTATCTTCTCTACGCAGCCCGTCACTTCGTACCCTTCGTCTTACTTTTCTCTATTGAAGCGGCGAAGCAGGAAATGTAGGGTTTGCACGGCTTTAGCGGTGGCTGATGAAGAAACGGTGCTTGCAGAAGAAATTAACGGAGAAAAACATGTGGACGCAGAAAACGATGACGTTTCCCATGAGAGAGAACCAAGCAAAGTGGGAAGACCAAGTGAAGTATACGTTTGCAATCTTCCAAGGAGCTGTGACTCAACGCAGCTTCACGATATGTTCAAGCCTTATGGAACTGTTCTATCTGCTGAGGTTGATCGTAATGACGAGACTGGTGAAAGTAGAGGATGTGGTTATGTCACAATGGGATCAGTAAACTCAGCAAAAAAAGCAGTTGCTGCATTGGATGGATCAGATGTTGCTGGGCGTGAAATGCGGGTTAGATTTTCAGCTGAGATGAATCCTGGAAGGAGAAATGCTGAGACGATGAACTCGTCACCCCAGAAAGTTATATACTATGAAACTCCTCACAAGTTGTATGTTGGCAATCTCGCTAGGGCTCTTAAACCTGAAGACTTATGGAATCATTTTCGAAGATTTGGGACTGTGGTTAGTGTAAGAATATTGCATGATCATAAAGTTGGGAATGGTCGCATTTATGCATTTATCTCCTTCCTTTCACGGTCAGAACGCGATGCAGCAATGTCTCTTCATGGAACTGAACTTCGTGGCCGTACGCTAGTAGTGAGAGAAGGCATTGAGAGGGCTGGGCCATAG 987 0.4559 MVQVRASGGARFICAISVLFKTPRQSGEMEAILCLTPPSFSSSRNKLQFAASAKRFASCSSLLPSSVFSLSLGAIFSTQPVTSYPSSYFSLLKRRSRKCRVCTALAVADEETVLAEEINGEKHVDAENDDVSHEREPSKVGRPSEVYVCNLPRSCDSTQLHDMFKPYGTVLSAEVDRNDETGESRGCGYVTMGSVNSAKKAVAALDGSDVAGREMRVRFSAEMNPGRRNAETMNSSPQKVIYYETPHKLYVGNLARALKPEDLWNHFRRFGTVVSVRILHDHKVGNGRIYAFISFLSRSERDAAMSLHGTELRGRTLVVREGIERAGP 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1286 328 Gene3D - 105 225 IPR012677 -
Lele39g1286 328 Gene3D - 226 326 IPR012677 -
Lele39g1286 328 CDD RRM_SF 249 320 - -
Lele39g1286 328 SMART rrm1_1 145 218 IPR000504 GO:0003723
Lele39g1286 328 SMART rrm1_1 248 320 IPR000504 GO:0003723
Lele39g1286 328 PANTHER OS02G0815200 PROTEIN 67 320 - -
Lele39g1286 328 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 146 216 IPR000504 GO:0003723
Lele39g1286 328 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 249 317 IPR000504 GO:0003723
Lele39g1286 328 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 247 324 IPR000504 GO:0003723
Lele39g1286 328 SUPERFAMILY RNA-binding domain, RBD 144 229 IPR035979 GO:0003676
Lele39g1286 328 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 144 222 IPR000504 GO:0003723
Lele39g1286 328 SUPERFAMILY RNA-binding domain, RBD 243 325 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1286 Lele-ChrLele39 21310937 21313105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1286 144 319 Eukaryotic Initiation Factors Gene Family AT4G34110 30.208 3.95e-13 68.2