Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1284 ATGGGTGAAGTGGTCGTGCCGACGGGTGATCAGGGGATGGAGGTCAGGTTGGAGACAGAGGAGGACCAGAGCAAGAAGATGGTTCGCTGGGAGAAGTTTTTACCTCGGATGGTGCTTAGAGTATTACTTGTGGAAGCGGATTATTCTACTCGTCATGTTATCGCGGCCCTTCTCAGTAAATGCAGTTACAAAGTTGCTGCAGTTCCTGATGGGCTGAAGGCATGGGAGACGCTGAAGCGGAGGGCTTCTGAAATAGATCTCATATTAACAGAAGTGGAGTTGCCATCAATATCGGGATTTGCACTTCTTACTTTGATCATGGAACATGATATGTGCAAGAACATTCCTGTCATAATGATGTCTACTCAGGATTCAGTTAGTTTGGCATTGAAATGCATTTTGAAAGGTGCAGCTGATTTTCTCATAAAACCTGTTCGGAGGAATGAGCTGAGGAACTTGTGGCAACATGTATGGAGAAGACATGAGATTAGCCGGCAACCTCAAACTATACCATTTCCACAGAAAAATCTGGAAACTACTTCTGAAAACAATGCTGCCAGCAATCATTCTAGTGGATCCGTGGCTTCCACACAGAAAAATAATGGACGCCCTGAGAAAGGGAGTGAGGCCCAAAGCACTTGTACATCGCCATTTTTGGAAGCTGAGAGTGCATGCATGCAAAATATGCAGGGCGCATCCCATATGAAGAGTTCTTCAAATCTGAGCAACATTGACACGGTGCAGAATGAAGACTCAACCATATTGGGATTGGAAAAGCAATCAGTTAAGCATAAAAATGAAACTGGAGATAAGTCAGGAGCATTGTTATCACCGGCTGCAAAGTGTGTCAAGAATATTAAAGCAACAGATTTTGGGCAGGATCAAGGACATGATTATGCTGAAACGGAGAATCAAGTTGAAGTTCTTAGAGCAGAGCCAAGCAGAGAAAATCCTAACATGGATACAGAGATTCATGGATGCAACAATGAACTGTTAGAGCCCTCTAGAGGAGTTATTGATTTGATTGCCACATTCAAGAATCTACCTGTAAAGAATGATGAAAGTTGTAATCTCAGCGGTTGTGGTGCAAAGAAGTTTGATTTTGATCCACGATTGGAGCTTTCTCTAAGGCGAGATTTTCATGGCAGCTCATCTAAACAAACAATTGATGAAAAACAGGCCTTGAACCATTCAAAGGCTTCAGCCTTTTCTTGGTATAGCGTGGTTAAGTTTCCATCACCATCTGGAAGCTCTACTAAAGCAGGTGGCCACAATGGGAATTCTCATGAAGCCAGTAAATCATCTAGAACTACCGTTGATACTTCCTGTCAATATGGGGGCACGAATCATAGTTCAGAGAATATGGCGACCCTTGCCATTGGCCAATCTGGTCAAGTTGAAATACAGTCGACAAACAATCAACTTGGACCATTTCCTGCTACTGGTGTTGCTTCTGATAACATGCCTACTGAATCCGAAAATGTTTTTCCATCTATGTTCTTCCCACAATCTGATGCTCATTCCAGACGGAGTCCTAAACCTAACTACCTGAAAGAGTGTTCTCCTCCCATTCTCACAAGTAACTCTGTCCAGTCCAATCCTGAAAGTCACAATTCGGAAGATCGTTTTCACTGTTCTGATGATGCCACCTATACTTGTGATAAAAATGCAAATGAAAAAAGTAATGTGGATCCTGCAAGACAACATTCTTCTGCTGTTGGTCAGAGCACCAGCAATGCCTCATGCCATGACACTGCAAATCAGAACAATAATGATGATAATAATACAAGCGCATATAAACTCGCATGCAAAATTGATGGAAATGCTTCTTCAGCTTCAGTAGTTGAGAGCAACCATGAAAATTATGGGGACAGCGGCCATAATAATGATGGATATGGAGGGACATATTCTCAGTGTCTCAGCCACAGAGAAGCCGCTCTAACAAAATTTCGGATGAAGCGGAAAGAGAGGTGCTATGAGAAAAAGGTCCGATATCTAAGCAGAAAAAAACTAGCAGAGCAGCGTCCTCGAGTTAAAGGTCAGTTTGTACGCCAAGTGCATAATAACGATCATCCTCCTGCTGATGTTGATGGTGGTTCGTGA 2103 0.4289 MGEVVVPTGDQGMEVRLETEEDQSKKMVRWEKFLPRMVLRVLLVEADYSTRHVIAALLSKCSYKVAAVPDGLKAWETLKRRASEIDLILTEVELPSISGFALLTLIMEHDMCKNIPVIMMSTQDSVSLALKCILKGAADFLIKPVRRNELRNLWQHVWRRHEISRQPQTIPFPQKNLETTSENNAASNHSSGSVASTQKNNGRPEKGSEAQSTCTSPFLEAESACMQNMQGASHMKSSSNLSNIDTVQNEDSTILGLEKQSVKHKNETGDKSGALLSPAAKCVKNIKATDFGQDQGHDYAETENQVEVLRAEPSRENPNMDTEIHGCNNELLEPSRGVIDLIATFKNLPVKNDESCNLSGCGAKKFDFDPRLELSLRRDFHGSSSKQTIDEKQALNHSKASAFSWYSVVKFPSPSGSSTKAGGHNGNSHEASKSSRTTVDTSCQYGGTNHSSENMATLAIGQSGQVEIQSTNNQLGPFPATGVASDNMPTESENVFPSMFFPQSDAHSRRSPKPNYLKECSPPILTSNSVQSNPESHNSEDRFHCSDDATYTCDKNANEKSNVDPARQHSSAVGQSTSNASCHDTANQNNNDDNNTSAYKLACKIDGNASSASVVESNHENYGDSGHNNDGYGGTYSQCLSHREAALTKFRMKRKERCYEKKVRYLSRKKLAEQRPRVKGQFVRQVHNNDHPPADVDGGS 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1284 700 Pfam CCT motif 643 685 IPR010402 GO:0005515
Lele39g1284 700 Gene3D - 37 266 - -
Lele39g1284 700 MobiDBLite consensus disorder prediction 414 450 - -
Lele39g1284 700 SMART REC_2 39 154 IPR001789 GO:0000160
Lele39g1284 700 MobiDBLite consensus disorder prediction 521 536 - -
Lele39g1284 700 MobiDBLite consensus disorder prediction 168 214 - -
Lele39g1284 700 MobiDBLite consensus disorder prediction 556 593 - -
Lele39g1284 700 PANTHER TWO-COMPONENT RESPONSE REGULATOR 39 398 IPR045279 GO:0009736
Lele39g1284 700 ProSiteProfiles Response regulatory domain profile. 40 158 IPR001789 GO:0000160
Lele39g1284 700 Pfam Response regulator receiver domain 41 152 IPR001789 GO:0000160
Lele39g1284 700 ProSiteProfiles CCT domain profile. 643 685 IPR010402 GO:0005515
Lele39g1284 700 SUPERFAMILY CheY-like 39 170 IPR011006 -
Lele39g1284 700 MobiDBLite consensus disorder prediction 671 700 - -
Lele39g1284 700 MobiDBLite consensus disorder prediction 502 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1284 Lele-ChrLele39 21302168 21306151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1284 618 692 Response Regulator Gene Family AT5G24470 65.385 8.25e-22 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lele39g1284 Response_reg 2.7e-20 CL0304