LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele39g1284	ATGGGTGAAGTGGTCGTGCCGACGGGTGATCAGGGGATGGAGGTCAGGTTGGAGACAGAGGAGGACCAGAGCAAGAAGATGGTTCGCTGGGAGAAGTTTTTACCTCGGATGGTGCTTAGAGTATTACTTGTGGAAGCGGATTATTCTACTCGTCATGTTATCGCGGCCCTTCTCAGTAAATGCAGTTACAAAGTTGCTGCAGTTCCTGATGGGCTGAAGGCATGGGAGACGCTGAAGCGGAGGGCTTCTGAAATAGATCTCATATTAACAGAAGTGGAGTTGCCATCAATATCGGGATTTGCACTTCTTACTTTGATCATGGAACATGATATGTGCAAGAACATTCCTGTCATAATGATGTCTACTCAGGATTCAGTTAGTTTGGCATTGAAATGCATTTTGAAAGGTGCAGCTGATTTTCTCATAAAACCTGTTCGGAGGAATGAGCTGAGGAACTTGTGGCAACATGTATGGAGAAGACATGAGATTAGCCGGCAACCTCAAACTATACCATTTCCACAGAAAAATCTGGAAACTACTTCTGAAAACAATGCTGCCAGCAATCATTCTAGTGGATCCGTGGCTTCCACACAGAAAAATAATGGACGCCCTGAGAAAGGGAGTGAGGCCCAAAGCACTTGTACATCGCCATTTTTGGAAGCTGAGAGTGCATGCATGCAAAATATGCAGGGCGCATCCCATATGAAGAGTTCTTCAAATCTGAGCAACATTGACACGGTGCAGAATGAAGACTCAACCATATTGGGATTGGAAAAGCAATCAGTTAAGCATAAAAATGAAACTGGAGATAAGTCAGGAGCATTGTTATCACCGGCTGCAAAGTGTGTCAAGAATATTAAAGCAACAGATTTTGGGCAGGATCAAGGACATGATTATGCTGAAACGGAGAATCAAGTTGAAGTTCTTAGAGCAGAGCCAAGCAGAGAAAATCCTAACATGGATACAGAGATTCATGGATGCAACAATGAACTGTTAGAGCCCTCTAGAGGAGTTATTGATTTGATTGCCACATTCAAGAATCTACCTGTAAAGAATGATGAAAGTTGTAATCTCAGCGGTTGTGGTGCAAAGAAGTTTGATTTTGATCCACGATTGGAGCTTTCTCTAAGGCGAGATTTTCATGGCAGCTCATCTAAACAAACAATTGATGAAAAACAGGCCTTGAACCATTCAAAGGCTTCAGCCTTTTCTTGGTATAGCGTGGTTAAGTTTCCATCACCATCTGGAAGCTCTACTAAAGCAGGTGGCCACAATGGGAATTCTCATGAAGCCAGTAAATCATCTAGAACTACCGTTGATACTTCCTGTCAATATGGGGGCACGAATCATAGTTCAGAGAATATGGCGACCCTTGCCATTGGCCAATCTGGTCAAGTTGAAATACAGTCGACAAACAATCAACTTGGACCATTTCCTGCTACTGGTGTTGCTTCTGATAACATGCCTACTGAATCCGAAAATGTTTTTCCATCTATGTTCTTCCCACAATCTGATGCTCATTCCAGACGGAGTCCTAAACCTAACTACCTGAAAGAGTGTTCTCCTCCCATTCTCACAAGTAACTCTGTCCAGTCCAATCCTGAAAGTCACAATTCGGAAGATCGTTTTCACTGTTCTGATGATGCCACCTATACTTGTGATAAAAATGCAAATGAAAAAAGTAATGTGGATCCTGCAAGACAACATTCTTCTGCTGTTGGTCAGAGCACCAGCAATGCCTCATGCCATGACACTGCAAATCAGAACAATAATGATGATAATAATACAAGCGCATATAAACTCGCATGCAAAATTGATGGAAATGCTTCTTCAGCTTCAGTAGTTGAGAGCAACCATGAAAATTATGGGGACAGCGGCCATAATAATGATGGATATGGAGGGACATATTCTCAGTGTCTCAGCCACAGAGAAGCCGCTCTAACAAAATTTCGGATGAAGCGGAAAGAGAGGTGCTATGAGAAAAAGGTCCGATATCTAAGCAGAAAAAAACTAGCAGAGCAGCGTCCTCGAGTTAAAGGTCAGTTTGTACGCCAAGTGCATAATAACGATCATCCTCCTGCTGATGTTGATGGTGGTTCGTGA	2103	0.4289	MGEVVVPTGDQGMEVRLETEEDQSKKMVRWEKFLPRMVLRVLLVEADYSTRHVIAALLSKCSYKVAAVPDGLKAWETLKRRASEIDLILTEVELPSISGFALLTLIMEHDMCKNIPVIMMSTQDSVSLALKCILKGAADFLIKPVRRNELRNLWQHVWRRHEISRQPQTIPFPQKNLETTSENNAASNHSSGSVASTQKNNGRPEKGSEAQSTCTSPFLEAESACMQNMQGASHMKSSSNLSNIDTVQNEDSTILGLEKQSVKHKNETGDKSGALLSPAAKCVKNIKATDFGQDQGHDYAETENQVEVLRAEPSRENPNMDTEIHGCNNELLEPSRGVIDLIATFKNLPVKNDESCNLSGCGAKKFDFDPRLELSLRRDFHGSSSKQTIDEKQALNHSKASAFSWYSVVKFPSPSGSSTKAGGHNGNSHEASKSSRTTVDTSCQYGGTNHSSENMATLAIGQSGQVEIQSTNNQLGPFPATGVASDNMPTESENVFPSMFFPQSDAHSRRSPKPNYLKECSPPILTSNSVQSNPESHNSEDRFHCSDDATYTCDKNANEKSNVDPARQHSSAVGQSTSNASCHDTANQNNNDDNNTSAYKLACKIDGNASSASVVESNHENYGDSGHNNDGYGGTYSQCLSHREAALTKFRMKRKERCYEKKVRYLSRKKLAEQRPRVKGQFVRQVHNNDHPPADVDGGS	700

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele39g1284	700	Pfam	CCT motif	643	685	IPR010402	GO:0005515
	Lele39g1284	700	Gene3D	-	37	266	-	-
	Lele39g1284	700	MobiDBLite	consensus disorder prediction	414	450	-	-
	Lele39g1284	700	SMART	REC_2	39	154	IPR001789	GO:0000160
	Lele39g1284	700	MobiDBLite	consensus disorder prediction	521	536	-	-
	Lele39g1284	700	MobiDBLite	consensus disorder prediction	168	214	-	-
	Lele39g1284	700	MobiDBLite	consensus disorder prediction	556	593	-	-
	Lele39g1284	700	PANTHER	TWO-COMPONENT RESPONSE REGULATOR	39	398	IPR045279	GO:0009736
	Lele39g1284	700	ProSiteProfiles	Response regulatory domain profile.	40	158	IPR001789	GO:0000160
	Lele39g1284	700	Pfam	Response regulator receiver domain	41	152	IPR001789	GO:0000160

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele39g1284	Lele-ChrLele39	21302168	21306151	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele39g1284	618	692	Response Regulator Gene Family	AT5G24470	65.385	8.25e-22	98.2

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Pseudo ARR-B	Lele39g1284		Response_reg	2.7e-20	CL0304

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