Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1280 ATGCAATACAAAGGAGGCTTAGCTACTTACTTAGCCATGTACTTGCACATCCCATGTGCTCCGTCAATTTACGGGTGGGATCTCAAAAGCAGGTTCTCATTGATGATGGAGAGGATTCAAGGACCCATCAATTCCTGTTTCTTTGGTGAGCATTTGGAAGTAAATTGTTTCGAGCAAGGCTTCATCAACGCAGAGGATGAGGAACAGGTTTATATATCGAGCTTAGAGGATGAAAATATGCCATTTCTGCAGATGTTGCAGAGTGCGGAATCCTCACAACAGTTTTTCCCATTCGCGGAGGCAAATTTTCAAACACTTTTGAGGGTACAGAACATGAAGAAACAACAACCACAACCATGGGAAGAAGAAGCTCGCATACCCAGATTGGAGACCCAAATCCAAGCTAAAGAACTTGAAAGCTGTGTCACACACGAAGTTGTCGAGATTCACTCGCCGGTGAAATCCGAAACCAAAGAAGAATCTCATCTTCTTCCTCGTTTAGCCACAATGGTTAACAAAGAACCCACCAATGTTCAAGCTGAAAATTCTTGCAGAGACCCCAAACGGAGAAAGCGAAAGAGAGCGAGACCAAGCAAGAACAAGGAAGAAGTGGAGAACCAGAGAATGACCCACATTGCCGTTGAACGGAACCGGCGACGCCAGATGAACGACCATCTCAATGTTCTAAGGACCCTCATGCCTCCTTCCTATATTCAAAGGGGTGACCAAGCGTCAATCATCGGAGGTGCCATTGATTTCGTGAAGGAATTGGAACAACTACTTCAAACTCTCGAGACACAGAAGAATATTAGAAAGAACGAAGAGATTGGATCATCTTCGTCTGGGGAGACTGTGAAGGCATCATCACTGAGCTACGAAGAAGAAGTAGAGTGTGGTGGGGAAGAAGAGTTGAAGGAAGCAGAGATCATAGAGGTGACGGTGATTCAGACGCATGTGAACTTGAAGATTCGATGCAGAAAAAGACATGGGCAATTGGTGAGAGCCATTGTTGGGTTGGAAGATCTTAGGCTCAGCGTTCTGCATCTCAACATCACCTCGTCGCGGGGATCGGTAGTATACTGTTTCAATCTCAAGATTGAAGAGGAGTGTAAGGTAGGGTCGGCGAATGAAATAGCAGAAGCGGTTCGTCATATATTCAGAACGATGGATAATTAA 1176 0.4507 MQYKGGLATYLAMYLHIPCAPSIYGWDLKSRFSLMMERIQGPINSCFFGEHLEVNCFEQGFINAEDEEQVYISSLEDENMPFLQMLQSAESSQQFFPFAEANFQTLLRVQNMKKQQPQPWEEEARIPRLETQIQAKELESCVTHEVVEIHSPVKSETKEESHLLPRLATMVNKEPTNVQAENSCRDPKRRKRKRARPSKNKEEVENQRMTHIAVERNRRRQMNDHLNVLRTLMPPSYIQRGDQASIIGGAIDFVKELEQLLQTLETQKNIRKNEEIGSSSSGETVKASSLSYEEEVECGGEEELKEAEIIEVTVIQTHVNLKIRCRKRHGQLVRAIVGLEDLRLSVLHLNITSSRGSVVYCFNLKIEEECKVGSANEIAEAVRHIFRTMDN 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1280 391 MobiDBLite consensus disorder prediction 174 207 - -
Lele39g1280 391 Pfam Helix-loop-helix DNA-binding domain 207 258 IPR011598 GO:0046983
Lele39g1280 391 PANTHER MAX DIMERIZATION, MAD 140 388 - -
Lele39g1280 391 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 270 IPR036638 GO:0046983
Lele39g1280 391 CDD bHLH_AtFAMA_like 209 281 - -
Lele39g1280 391 SMART finulus 212 263 IPR011598 GO:0046983
Lele39g1280 391 Coils Coil 254 274 - -
Lele39g1280 391 Gene3D - 197 282 IPR036638 GO:0046983
Lele39g1280 391 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 257 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1280 Lele-ChrLele39 21284487 21287975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1280 85 386 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46810 41.360 1.34e-69 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele39g1280 HLH 3.4e-10 No_clan