LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele39g1277	ATGCAACTTGGCTCATTACGCAGGACGCTTGACGAGTCTACCAATTTTTATATCACTCAGCGTCCATCTCTCCCTTCATCAACTTCTAACTCAATGGCTCAGCCACAAGAATTTCGTTCTCTGGACAGCGAAGAGAACGGTAGTCAACTCCTGAAGCGTCAATCACCAGAAATAGATGACGTAGAAGAAGAGAGCTTCTCCTACGCCATGCAGCTCGCCACTTCTGCTGCGATTTCCATGGCCATGCAAACCGCGGTGGAGCTCGGTGTCTTCGATGTCATCCATAGAGCTGGCCCAGGTGCCAAGCTCTCCGCTGCGGAGATCGTGTCGGAGCTTTCTTGCAAGAACCCCGAAGCACCTTGTGCTCTGGATCGGCTCCTTCGCCTTCTAGCGTCTCACTCTGTTCTTTCCTGTTCTGTTGTTGCTGACGACGAACAAGGGCCGGCATGTTTCCGACGGTTGTTCGGCCTCGCTCCGGTAGGTAAATTCTTTGTACAAAATGCCGATGGTGGCTCGCTGGGCCCTTTAATTGTATTGGCTCAAGATAAGGTCTACCTTGACAGCTGGCGGCAACTGAAAGATGCAATAATGGAAGGGGGTATAGCTTTCAATAGGATGCATGGATCGCATGCTTTTGAGTATCCGAGATTGGATTGGAGGTTCAGTGATGCTTTTAACAAGGGAATGGCGAATCAGACCACTCTGGTTGTGAAGAAGATTCTTGAATCCTACAAAGGTTTTGACAACATCACTAGACTTGTTGACGTTGGTGGAGGTCTTGGCGTTACTCTTAACTTGATCACTTCCAAATATCCCCATATTCAAGGGATCAATTTCGACTTGCCTCATGTCATCCAACACGCTCCTCCTTATCCTGGCGTCGAACATGTGAGAGGAGATATGTTTGAAAGTGTGCCTCAAGGAGATGCCATCTTCATGAAGTGGATACTCCATGATTGGAGCGACGAAAAATGCTTGAAGCTGTTGAAGAATTGCTATAAGGCAATTCCTGAAGATGGAAAAGTGATTGTGGTGGAAGCAGTTTTGGACGTCGTACCAGAGATTTCTATTGCTGCAAAGAGCGTATCCCAAATTGATCTGATGATGATGACCCAAACTCCAGGTGGCAAAGAGAGAAGTGAGCATGAATTCATGGAACTGGCTACATCAGCTGGGTTTAGAGGCATTCGATATAACTGTTTTGTTCGTAACTTATGGGTTATGGAGATCTTCAAATAG	1239	0.4705	MQLGSLRRTLDESTNFYITQRPSLPSSTSNSMAQPQEFRSLDSEENGSQLLKRQSPEIDDVEEESFSYAMQLATSAAISMAMQTAVELGVFDVIHRAGPGAKLSAAEIVSELSCKNPEAPCALDRLLRLLASHSVLSCSVVADDEQGPACFRRLFGLAPVGKFFVQNADGGSLGPLIVLAQDKVYLDSWRQLKDAIMEGGIAFNRMHGSHAFEYPRLDWRFSDAFNKGMANQTTLVVKKILESYKGFDNITRLVDVGGGLGVTLNLITSKYPHIQGINFDLPHVIQHAPPYPGVEHVRGDMFESVPQGDAIFMKWILHDWSDEKCLKLLKNCYKAIPEDGKVIVVEAVLDVVPEISIAAKSVSQIDLMMMTQTPGGKERSEHEFMELATSAGFRGIRYNCFVRNLWVMEIFK	412

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele39g1277	412	SUPERFAMILY	"Winged helix" DNA-binding domain	61	167	IPR036390	-
	Lele39g1277	412	Gene3D	Vaccinia Virus protein VP39	165	412	IPR029063	-
	Lele39g1277	412	MobiDBLite	consensus disorder prediction	17	53	-	-
	Lele39g1277	412	Pfam	O-methyltransferase domain	189	394	IPR001077	GO:0008171
	Lele39g1277	412	PANTHER	O-METHYLTRANSFERASE	69	397	IPR016461	GO:0008168
	Lele39g1277	412	Gene3D	-	48	164	IPR036388	-
	Lele39g1277	412	Pfam	Dimerisation domain	80	131	IPR012967	GO:0046983
	Lele39g1277	412	FunFam	Caffeic acid O-methyltransferase	165	412	-	-
	Lele39g1277	412	MobiDBLite	consensus disorder prediction	17	59	-	-
	Lele39g1277	412	FunFam	Caffeic acid 3-O-methyltransferase	48	164	-	-
	Lele39g1277	412	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	169	409	IPR029063	-
	Lele39g1277	412	PIRSF	O-mtase	48	412	IPR016461	GO:0008168
	Lele39g1277	412	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	70	412	IPR016461	GO:0008168

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele39g1277	Lele-ChrLele39	21267684	21270915	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele39g1277	61	412	Monolignol Biosynthesis Gene Families	AT5G54160	51.989	4.39e-137	395