Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1268 ATGGAATTGACGCGAGAAGCTGCAAATAAAGGGTATTCTGATCATAGCAGAGAAGAATTAGTGGATGAGGAAGAGGATTTAGCTGAAACCAGTAATAAAGAAAGCAGTAAGCAATACTATCCCTTTTCTTCTTCTTCTTCTTCACCTCCAAATCTATGGTTGGGGATGCTTCATCAGCATCGTCATCATCATCATCAACATCCTCACGATCATCATCATCATCAACAATCTCCGGAGGCCACAACCCCTTGTGAATCTCACAATTCGTCATCTTTGTTAGGGTTACACCATCAGGATGCACCTTCTAATTCCAATTCCGCCATTAACAATCCCAACAAGAAGCTAGACTTCATGGACCTATCGCTCGGGAACAAGGAAGAAGATGAAGCCAACAACAAACCTATCGAGAAAGAGCACATGTTTGATAAGGTTGTGACGCCGAGTGATGTCGGAAAACTGAACCGCCTCGTGATACCGAAACAGCACGCCGAGAGGTACTTCCCGCTCGATTCTTCCTCCAACGAGAAAGGCCTTCTCTTGAATTTCGAGGACATCAACGGCAAGCTATGGCGGTTCCGGTACTCTTACTGGAACAGTAGCCAGAGCTATGTTATGACCAAAGGATGGAGCCGTTTTGTTAAGGAGAAGAAGCTCGACGCCGGCGACATTGTATCCTTCCAACGCGGCCTTGGCGAATTGTATAGACATAGGTTGTACATAGACTGGAGGCGCCGGCCGGATTACGCCGCCACCGATCATCATCGCCATGCCGCCGCATTTACACCGTTACTCCTACCAAATCAGTATTCCATCAGATGGGACGGTAGATTATACTCAGTTCCCACGGTGGCGGCGCCACCACCGCGACACGACGAGCCTTTACAGCAAGTGAACTGCAACAATTACCCCTTTCAGCAGCAGCAACACCACCAACTACTTCAGTACCAGCGACAACAACAACAACATCATCAGCACAATCATCATCATCATCACCAGCTCTATAGTGGAAGTCAAGGAAGCTATAATGAGCTGAATTTGGGATCTGGGTCGTCGCTTTACTACCTGAGGACGGCGTCAGAGTCTGCGGCGGCGGCGTCGGGAGATCAGAATTTAATGAAGCAGCGACAGGGAGGCAGCAATGTAAGTCCGATGATAATCGATTCGGTTCCAGTAGTCCATGGAAAGAGCAGTTCAAGTAGTGGTAGAATTAATGATCCAACAGCAAAGAAGCTTAGGCTATTTGGGGTGAATATGGAATGTTCTTCGTCATCAAACACAGTAGGACATGTGCCAATGGCTGCTGATTCATCACTTTCCTCACCAAATCTTCAGTATTTGAGAGAATCCCATCATCATGAAGAACAAGATCCACTTTCTTCTACATCATCATCGTCAGCATCAAGATTTGCAGATCAAAAGGGGAAAACTTCTGTGCTTTTTGATCTGAGTCCGTCATTCCAATACCGACACTAG 1473 0.4671 MELTREAANKGYSDHSREELVDEEEDLAETSNKESSKQYYPFSSSSSSPPNLWLGMLHQHRHHHHQHPHDHHHHQQSPEATTPCESHNSSSLLGLHHQDAPSNSNSAINNPNKKLDFMDLSLGNKEEDEANNKPIEKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSSSNEKGLLLNFEDINGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGELYRHRLYIDWRRRPDYAATDHHRHAAAFTPLLLPNQYSIRWDGRLYSVPTVAAPPPRHDEPLQQVNCNNYPFQQQQHHQLLQYQRQQQQHHQHNHHHHHQLYSGSQGSYNELNLGSGSSLYYLRTASESAAAASGDQNLMKQRQGGSNVSPMIIDSVPVVHGKSSSSSGRINDPTAKKLRLFGVNMECSSSSNTVGHVPMAADSSLSSPNLQYLRESHHHEEQDPLSSTSSSSASRFADQKGKTSVLFDLSPSFQYRH 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1268 490 MobiDBLite consensus disorder prediction 458 474 - -
Lele39g1268 490 SUPERFAMILY DNA-binding pseudobarrel domain 138 231 IPR015300 -
Lele39g1268 490 MobiDBLite consensus disorder prediction 79 112 - -
Lele39g1268 490 MobiDBLite consensus disorder prediction 1 18 - -
Lele39g1268 490 MobiDBLite consensus disorder prediction 363 384 - -
Lele39g1268 490 MobiDBLite consensus disorder prediction 57 71 - -
Lele39g1268 490 CDD B3_DNA 139 228 IPR003340 GO:0003677
Lele39g1268 490 MobiDBLite consensus disorder prediction 448 474 - -
Lele39g1268 490 MobiDBLite consensus disorder prediction 307 340 - -
Lele39g1268 490 Gene3D - 135 257 IPR015300 -
Lele39g1268 490 SMART B3_2 141 246 IPR003340 GO:0003677
Lele39g1268 490 ProSiteProfiles B3 DNA-binding domain profile. 141 246 IPR003340 GO:0003677
Lele39g1268 490 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 12 439 IPR044800 GO:0003700
Lele39g1268 490 Coils Coil 13 33 - -
Lele39g1268 490 MobiDBLite consensus disorder prediction 33 53 - -
Lele39g1268 490 MobiDBLite consensus disorder prediction 1 112 - -
Lele39g1268 490 FunFam B3 domain-containing protein 134 255 - -
Lele39g1268 490 Pfam B3 DNA binding domain 141 245 IPR003340 GO:0003677
Lele39g1268 490 MobiDBLite consensus disorder prediction 363 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1268 Lele-ChrLele39 21203075 21204547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1268 119 426 RAV Transcription Factor Family AT2G46870 47.678 6.89e-79 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele39g1268 B3 9.7e-28 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1268 39 21203075 21204547 Lele39g1268 39 21203075 21204547 ECH
Lele37g0157 37 1287298 1288749 Lele39g1268 39 21203075 21204547 hybridization
Lele38g0168 38 1362053 1364073 Lele39g1268 39 21203075 21204547 hybridization