Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1263 ATGGCGGATCCAGCTCCGACGCGGAGACGTGCGCCTGTAGGATACAGATTCCGGCCGACCGAGGAAGAGCTCGTCGCTCACTACCTCCGACACAAATTGATGGCCGATGATCCTTCCATTTATACCACCATCCCTGAGATTGACGTTTGCAAGCACGAACCCTGGGATTTACTAGCTCTGGCTGCTTCAGCGTTTCCGGAGATCGATCCAGGCGACTCAGAATGCTATTTCTTTAGTCCTCGCGATTATAAGTACTCTAACAGTACTCGGTGTAACAGGACAACATCCCTGGGCTACTGGAAAGTCACCGGTAGAGACAAAAAAATTAAGGACCGAGGCACCAACAATGTTATTGGGACAAAGAAGAATTTAGTTTTTTATAAGGGTCGATCTCCTCGTGGAATCAAGCATAATTGGGTTATTCATGAATATGAGGATCTCTTGATTCCTCCGCTACAGAGGACTTATGTTCTATGTAGATTAATGAAGAAATATGAGAAGAAAACAAAAGGAAAAATGATTGATTATGATCATGGATTAATTCATGATGAAAAAGATTCCAATAATAATGTGGATTTTGAGCATGAAAATCAAGCAAATTTTTGTGTTGAATCTAAGGAATCTTATCCATCAAATATGGATTCAATGGTTTCAACTTCTTCTCTACCCAATGAACCTATAAATTTAAATTTTGAAATTTCTTACTATTCAAATGAACCTATAAACTCAAGTTTTGAAACTTCTTACCATCCAATTGAATTTATAAATTCAAGTGTTAAAACTTCTTACTATCCAAATGAACCTATAAACTCAAGTCTTCAAACTTCTTACCATTTAAATGAATCTATAAACTCAAGTCTTGAAATTTCTTACCATCCAAATGAATCTATAAACTCAAGTATTGAATCTTCTTATCATTTAAATGAAACTGTAAACTCAATTCAAACACAATCTCAATCCAATGAAGTTCTAGACTCAACTATTGAAGCACTCTTTCAGCCAAATGGAGTTATATCACAAGAATTAAATTCAACCGTGGAGGCACCATTTGGGTTTGATTCGGAAGAATTCTACACTAGCTTACTCTTGCAACTGGTTCCAACCATGGATGAGCAAGGGTTAGGGGAAATATTGGCCCCATCTTATATGTAA 1152 0.3741 MADPAPTRRRAPVGYRFRPTEEELVAHYLRHKLMADDPSIYTTIPEIDVCKHEPWDLLALAASAFPEIDPGDSECYFFSPRDYKYSNSTRCNRTTSLGYWKVTGRDKKIKDRGTNNVIGTKKNLVFYKGRSPRGIKHNWVIHEYEDLLIPPLQRTYVLCRLMKKYEKKTKGKMIDYDHGLIHDEKDSNNNVDFEHENQANFCVESKESYPSNMDSMVSTSSLPNEPINLNFEISYYSNEPINSSFETSYHPIEFINSSVKTSYYPNEPINSSLQTSYHLNESINSSLEISYHPNESINSSIESSYHLNETVNSIQTQSQSNEVLDSTIEALFQPNGVISQELNSTVEAPFGFDSEEFYTSLLLQLVPTMDEQGLGEILAPSYM 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1263 383 Gene3D NAC domain 20 170 IPR036093 GO:0003677|GO:0006355
Lele39g1263 383 ProSiteProfiles NAC domain profile. 11 164 IPR003441 GO:0003677|GO:0006355
Lele39g1263 383 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 280 - -
Lele39g1263 383 Pfam No apical meristem (NAM) protein 12 145 IPR003441 GO:0003677|GO:0006355
Lele39g1263 383 SUPERFAMILY NAC domain 8 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1263 Lele-ChrLele39 21155840 21157584 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1263 12 171 NAC Transcription Factor Family AT4G35580 50.303 8.10e-47 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele39g1263 NAM 2.2e-30 No_clan