Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1253 ATGGCTGAGGGACTGGATAAGCCTTTGCTTGACCCTGAGAATTTCAGTCGAGAAGGTGTTGATTTGGAACGCATACCCTTAGAAGAAGTTTTTGAGCAGCTAAAAACATCGCCAAGAGGTCTTTCTTCTGATGATGCTGAAGCCAGACTGGTGATATTTGGCCCAAACAAGCTTGAAGAGAAACCTGAAAATAAATTTTTGAAGTTTCTGAGTTTCATGTGGAATCCTCTATCATGGGTTATGGAAGCTGCTGCTATAATGGCAATTGCTCTTGCTAATGGTGGAGGGGAGGGTCCTGATTGGCAGGACTTTCTAGGGATTGTATGCCTTCTGGTCATAAATTCCACCATTAGTTTTATTGAAGAGAATAATGCTGGAAATGCAGCAGCTGCCCTCATGGCTCGTTTAGCTCCAAAAACGAAGGTTCTGAGAGATGGCCAGTGGCAAGAGCAAGATGCATCTATTTTGGTACCTGGAGATATAATCAGCATAAAGCTGGGAGATATCGTTCCAGCTGATGCTCGCCTTCTCGAAGGTGACCCTCTAAAAATTGACCAGTCGGCTCTCACCGGAGAATCTTTGCCTGTGACAAAGAGGACAGGAGATGAAGTCTTTTCTGGGTCAACATGTAAGCATGGAGAGATTGAAGCGGTAGTCATTGCAACAGGAGTTCACACCTTTTTTGGAAAGGCAGCACACTTAGTTGATAGTACGATAGTTGTTGGACATTTTCAAAAGGTCCTAACCTCAATAGGGAACTTCTGCATTTGCTCTATAGCTGTAGGGATGGTTATTGAAATCATAGTAATGTATCCTATAGAGAAACGTTCATATAGGGATGGAATCAACAACCTTCTTGTTCTCTTAATTGGAGGAATTCCCATAGCCATGCCAACAGTGCTATCCGTGACGCTCGCGATTGGATCGCATCGGCTTTCACAGCAGGGAGCCATCACAAAGAGAATGACAGCAATTGAAGAAATGGCAGGCATGGATGTACTATGCAGTGATAAGACTGGAACTCTTACCCTGAATCGCCTTACCGTTGACCGAAACCTTATAGAGGTCTTTAACAGCAATATGGGAAAAGATATGGTTGTCCTTCTAGCAGCCAGAGCAGCTAGGTTGGAAAATCAGGACGCCATTGATGCCGCCATCGTTAATATGCTAGCTGATCCGAGGGAGGCACGTGCAAACATCACTGAAGTTCATTTTCTACCTTTCAATCCAGTAGACAAACGTACTGCTATTACATATTATGATTCTGAAGGCAATTGGTATAGGGCCAGCAAAGGAGCTCCTGAACAGATTCTAAATATGTGCCAAGAGAAAGATGAGATTGCCGGAAAAGTTCATACCATCATCGACAAATACGCTGAAAGGGGCTTGCGATCTCTTGCAGTTGCTTTGCAGGAAGTTCCTGAGAAGTCCAAGGAGAGTCCTGGAGGTCCTTGGACTTTTTGTGGGCTGCTGCCCTTATTTGATCCTCCAAGGCATGATAGTGCTGAGACTATACGTAGAGCACTTAACCTCGGAGTCAATGTTAAGATGATTACAGGGGATCAGCTGGCAATTGCAAAAGAGACAGGCCGAAGACTTGGTATGGGGACAAATATGTATCCTTCTTCTTCATTGTTAGGCCGTCACAAAGATGAAAATGAAGCTCTCCCAGTAGACGAGCTCATTGAAAAGGCAGATGGCTTTGCTGGTGTATTTCCTGAACACAAGTATGAAATTGTGAAAATTTTACAAGAAAAGAAGCACGTAGTTGGAATGACTGGAGATGGTGTAAATGATGCACCGGCTTTAAAGAAAGCTGACATTGGGATTGCTGTGTCAGATGCAACTGATGCTGCAAGAGGTGCTGCTGATTTAGTCTTAACTGAGCCCGGCTTAAGTGTTATTGTCAGTGCTGTGTTAACTAGCCGAGCTATATTTCAAAGAATGAAGAATTATACAATATATGCAGTCTCCATAACCATTCGTATAGTGCTTGGTTTTATGCTTCTGGCATTGATTTGGGAGTATGACTTTCCCCCTTTCATGGTCCTGGTCATCGCCATACTGAATGATGGGACCATTATGACGATATCAAAAGATCGCGTAAAACCATCGCCGACTCCAGACAGTTGGAAGCTGCCAGAGATATTTGCAACTGGAATAGTTATTGGCACTTACCTTGCTTTCGTCACTGTTCTGTTCTACTGGGCAGTAGTGGACACCACTTTCTTTGAGACTCACTTCCATGTAGCCTCCTTATCCAGTGACAGTGAGAAAGTTTCATCAGCTGTATATCTTCAAGTCAGTATCATCAGCCAGGCTTTGATTTTTGTAACACGAAGTCAAGGATGGTCATACCTAGAGAGACCTGGAGTTCTCTTGATATGTGCCTTTGTTGTGGCCACCTTGATAGCTGTGTATGCACATATCAGCTTTGCTAAAATTACAGGCATTGGATGGGAATGGGCTGGTGTTATATGGTTATACAGCTTGATCTTCTATGTACCTTTGGACATAATCAAGTTCACAATTCGCTATATTTTGAGTGGCCAAGCCTGGAATCTGGTATTTGACAGAAAGACTGCTTTTAGTTCTAAGAAAGACTATGGAAAAGAAGATAGGGCCGCAAAATGGATTGTTTCTCAGAGAAGCTTACAAGGATTGTGGGGCGTAGACTTAGAGGTGAAGAATGGAATCGGAAGACGATCTTCTTCTTTGATTGCCGAACAAGCAAGAAGACGTGCTGAAATCGCAAGGCTGGGAGAATTACACACTTTGAGAGGACATGTGGAGTCTGTTTTGAGACTCAAGAACTTGGACCGAAGCGTTCTTCAATCAGCATACACAGTGTGA 2853 0.4353 MAEGLDKPLLDPENFSREGVDLERIPLEEVFEQLKTSPRGLSSDDAEARLVIFGPNKLEEKPENKFLKFLSFMWNPLSWVMEAAAIMAIALANGGGEGPDWQDFLGIVCLLVINSTISFIEENNAGNAAAALMARLAPKTKVLRDGQWQEQDASILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKRTGDEVFSGSTCKHGEIEAVVIATGVHTFFGKAAHLVDSTIVVGHFQKVLTSIGNFCICSIAVGMVIEIIVMYPIEKRSYRDGINNLLVLLIGGIPIAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDRNLIEVFNSNMGKDMVVLLAARAARLENQDAIDAAIVNMLADPREARANITEVHFLPFNPVDKRTAITYYDSEGNWYRASKGAPEQILNMCQEKDEIAGKVHTIIDKYAERGLRSLAVALQEVPEKSKESPGGPWTFCGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGRHKDENEALPVDELIEKADGFAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKADIGIAVSDATDAARGAADLVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWEYDFPPFMVLVIAILNDGTIMTISKDRVKPSPTPDSWKLPEIFATGIVIGTYLAFVTVLFYWAVVDTTFFETHFHVASLSSDSEKVSSAVYLQVSIISQALIFVTRSQGWSYLERPGVLLICAFVVATLIAVYAHISFAKITGIGWEWAGVIWLYSLIFYVPLDIIKFTIRYILSGQAWNLVFDRKTAFSSKKDYGKEDRAAKWIVSQRSLQGLWGVDLEVKNGIGRRSSSLIAEQARRRAEIARLGELHTLRGHVESVLRLKNLDRSVLQSAYTV 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1253 950 PRINTS H+-transporting ATPase (proton pump) signature 451 469 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele39g1253 950 PRINTS H+-transporting ATPase (proton pump) signature 765 786 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele39g1253 950 PRINTS H+-transporting ATPase (proton pump) signature 624 649 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele39g1253 950 PRINTS H+-transporting ATPase (proton pump) signature 565 581 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele39g1253 950 PRINTS H+-transporting ATPase (proton pump) signature 593 609 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele39g1253 950 FunFam ATPase 4 plasma membrane-type 583 816 - -
Lele39g1253 950 SUPERFAMILY Calcium ATPase, transduction domain A 138 235 IPR008250 -
Lele39g1253 950 Gene3D - 100 816 - -
Lele39g1253 950 SFLD p-type atpase 317 645 IPR044492 -
Lele39g1253 950 Gene3D - 138 222 - -
Lele39g1253 950 PRINTS P-type cation-transporting ATPase superfamily signature 489 500 - -
Lele39g1253 950 PRINTS P-type cation-transporting ATPase superfamily signature 511 521 - -
Lele39g1253 950 PRINTS P-type cation-transporting ATPase superfamily signature 185 199 - -
Lele39g1253 950 PRINTS P-type cation-transporting ATPase superfamily signature 593 612 - -
Lele39g1253 950 PRINTS P-type cation-transporting ATPase superfamily signature 335 349 - -
Lele39g1253 950 PRINTS P-type cation-transporting ATPase superfamily signature 616 628 - -
Lele39g1253 950 ProSitePatterns E1-E2 ATPases phosphorylation site. 337 343 IPR018303 -
Lele39g1253 950 CDD P-type_ATPase_H 40 842 IPR006534 GO:0008553|GO:0016020|GO:0120029
Lele39g1253 950 Gene3D - 902 950 - -
Lele39g1253 950 SFLD Haloacid Dehalogenase 317 645 - -
Lele39g1253 950 FunFam Plasma membrane ATPase 138 222 - -
Lele39g1253 950 Gene3D - 332 630 IPR023214 -
Lele39g1253 950 Pfam haloacid dehalogenase-like hydrolase 331 607 - -
Lele39g1253 950 SUPERFAMILY HAD-like 331 640 IPR036412 -
Lele39g1253 950 FunFam Plasma membrane ATPase 487 641 - -
Lele39g1253 950 Pfam Cation transporter/ATPase, N-terminus 25 87 IPR004014 -
Lele39g1253 950 SUPERFAMILY Calcium ATPase, transmembrane domain M 21 848 IPR023298 -
Lele39g1253 950 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 40 806 IPR006534 GO:0008553|GO:0016020|GO:0120029
Lele39g1253 950 Pfam E1-E2 ATPase 136 314 - -
Lele39g1253 950 Gene3D - 347 494 IPR023299 GO:0000166
Lele39g1253 950 FunFam Plasma membrane ATPase 347 494 - -
Lele39g1253 950 PANTHER CALCIUM-TRANSPORTING ATPASE 24 883 - -
Lele39g1253 950 SMART Cation_ATPase_N_a_2 21 93 IPR004014 -
Lele39g1253 950 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 568 674 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele39g1253 950 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 107 354 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1253 Lele-ChrLele39 21081113 21087910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1253 1 950 Primary Pumps ATPases AT1G17260 79.665 0.0 1518