Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1248 ATGGGTGGCTTGGCAGGAACAGATGACAATATGGGTGATTCTCCGGGGTTGGAATTAACCGGAAAGATCATGGTCATAGCTATAATATTCCTCTTTTTCGTGATTGTGGTCATGTGTTTCCTCCATCTCTACGCCAAATGGTTCTGGTGGAGCATTGAAAGAAGCAGCACCACCCCCCACCCCCACAGCGGCCGCCGTCGCCGCCGTCGGTTTGTCTTCACTCCAGGTCAAGACCCCGCTATCTACGGCGTCCAGAGACGTGGACTTGACCCAGAAGTCCTTAGATCCTTACCTGTATCGATATACCGACCAGAGGATTTCAAAGATGGTTTGGAATGTGCAGTTTGTCTCAACGAGCTTGTTCATGGAGAAAAAGCAAGGATATTACCCAAATGCAATCATGGGTTTCATGTAGAATGCGTTGATATGTGGTTCCAATCACATTCTACCTGTCCACTTTGCAGGAACCTGGTCGCTTCTGAGTCCTCTGAATCCATTTACAGTTCAGGTGTTCGAGGAGATGTCTCAGACAATTCTAGCCAGTCATCATCAGACTCAGAAAGTTCAGATGCTATGAGCGAGGCAGATTTAGAGTCTCCAAATCTCCCCACAAATGTGTTGATTTGGGGAAATCAGACCCAAGTAAATTCTGTTGGCCCTGGTCCTTCGATTCAGGCACCTTCTTACTCATCATCGTCAGCGGCAGCAGATAATTGTAGCAGTAGCAACAATAACCATAGACGTAAGGGAATGTTGGTGATTGACATACCAAGAGAGATGAATCCATCATCTTTACCTTCTACTAGCAGGTGTGCTGAAGATGATTTGAAGTCACCAATGACATCTAGACTCAAGTCATTCACAAGGATGTTAAGCATGAAGTTCAGTCCTCGTAGTCCTGGTTCTGTAGATGTGGAACAAGCAGGGAGAGGACAGAGCTAA 942 0.465 MGGLAGTDDNMGDSPGLELTGKIMVIAIIFLFFVIVVMCFLHLYAKWFWWSIERSSTTPHPHSGRRRRRRFVFTPGQDPAIYGVQRRGLDPEVLRSLPVSIYRPEDFKDGLECAVCLNELVHGEKARILPKCNHGFHVECVDMWFQSHSTCPLCRNLVASESSESIYSSGVRGDVSDNSSQSSSDSESSDAMSEADLESPNLPTNVLIWGNQTQVNSVGPGPSIQAPSYSSSSAAADNCSSSNNNHRRKGMLVIDIPREMNPSSLPSTSRCAEDDLKSPMTSRLKSFTRMLSMKFSPRSPGSVDVEQAGRGQS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1248 313 MobiDBLite consensus disorder prediction 218 246 - -
Lele39g1248 313 SMART ring_2 113 154 IPR001841 -
Lele39g1248 313 MobiDBLite consensus disorder prediction 259 279 - -
Lele39g1248 313 Pfam Ring finger domain 112 155 IPR001841 -
Lele39g1248 313 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Lele39g1248 313 MobiDBLite consensus disorder prediction 261 279 - -
Lele39g1248 313 FunFam RING-H2 finger protein ATL3 82 160 - -
Lele39g1248 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 220 - -
Lele39g1248 313 SUPERFAMILY RING/U-box 93 159 - -
Lele39g1248 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 160 IPR013083 -
Lele39g1248 313 CDD RING-H2_EL5_like 112 155 - -
Lele39g1248 313 MobiDBLite consensus disorder prediction 168 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1248 Lele-ChrLele39 21032569 21033510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1248 16 292 C3H Transcription Factor Family AT1G53820 40.893 1.20e-62 199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1248 39 21032569 21033510 Lele39g1248 39 21032569 21033510 ECH
Lele37g0173 37 1426371 1427311 Lele39g1248 39 21032569 21033510 hybridization
Lele38g0182 38 1471940 1472875 Lele39g1248 39 21032569 21033510 hybridization