Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1243 ATGGAAAACTCTTCACTTTTTGAAAGCCGTCTCTTTCTACGTTTCTATATAACTCTCACCGCTCACCACAGTCATCACTTCACTCCAACTCCTTTCCTCTTTCTCTCTTCACAATCTTTGTCATCTATGAGCAAGTTCAGGCAAGTCTTCGCCGGGATCTCAGATCCCGGCAACCACAAGAGAAACATAAAGATCTTTCTTGCTCTGTTTTCCACTCTGCTTCTCCTTGGCCCCGCCGTCGGCATCATTGTCGACGTCAACTCCAACCAAAAATCTTCCGATAATTTGAATTTCTCCTCCCATCCATCCCATGCCATCGTCAAATCTGCTTGCAGCCCCACACTTTACCCTGAACTTTGCTTCTCCGCTATCTCCTCCGAGCCTGAATTCACCGAGAAAGTCTCTTCCCACCGCGATGTCATTGAGCTGTCCATAAAGATAACGACCAGAGCCATTGAGCATAACTTCTTCACCGTCGAGAAGCTGAAAGACAACAGAAAGGGAAGCCTCACGGAGAGAGAGAAAACCGCTCTTCACGACTGTTTAGAGATGATCGACGAAACACTCGACGAGCTTCACACCGTTTCGGAGGATCTGAAAATCTATCCTAACAAGAAAACTCTGTACCAGCATGCTGACGATCTAAAGACTCTGATAAGTGCCGCCATTACCAACCAGGTCTCGTGTCTCGACGGGTTCTCGCACGACGGCGCCGATAAGAAAGTGAGGTCAGCTCTAGAGGCAGGGCAGTTGCACGTGGAGCACATGTGCAGTAATGCTCTGGCGATGATTAAGAACATGACGGACACAGATGTGGCGAACTACGAGATGAAGATGGGGATTACAAAGAGCAGGAAGCTGATGGCGGCGACGTCGGAAGGCGGCGTTCAGTGGCCAGAGTGGATGTCTGCGGCAGACAGGCATTTGTTGCAGGCAACGGGGGTGAGATCTGACGTGGTGGTAGCGGCGGACGGGAGTGGAAATTTTAGGACAGTGTCGGCTGCAGTGGCTGCGGCACCGGAGAACAGTAAGAGGAGATATGTGATTAGGATAAAAGCAGGAGTTTACAGAGAGAATGTGGAAGTTCCGAAGAAGAAGACGAATATAATGTTCTTGGGAGACGGAAGACGTAATACTATCATTACAGGGAGGAGGAATGTTGTTGACGGAAGCACGACGTTCCATTCCGCCACCGTCGCCGTAGTGGGAGAAAGATTCCTAGCTCGTGACATAACCTTTGAAAACACGGCCGGGCCTTCGAAGCACCAAGCCGTCGCCCTCCGGGTAGGTTCCGACTTCGCAGCCTTCTACCAGTGTGACTTCCTCGCCTACCAGGACACCCTCTATGTCCACAACAACCGCCAATTCTTCATCAACTGCCTCATTTCCGGCACCGTCGACTTCATCTTTGGGAACTCCGCCGCCGTATTCCAAGACTGTGACATCCACGCCCGCCTACCTGGATCCGGCCAGAAGAACATGGTCACCGCACAGGGACGAGTTGACCCCAACCAGAACACCGGCATCGTTATCCAGAAATGTCGTATCGGAGCAACGAGGGACCTGGAGGCAAGGAAGAAGAGCGTCAAGACCTTCCTGGGCCGGCCATGGAAGCAATATTCGAGGACGGTGATAATGCAGTCAACAATAACGGACGTCATTGATCCAGCTGGATGGCACGAGTGGAATGGGAATTTCGCTTTGAACACTCTGTTCTACGGAGAGTATCAGAATAGAGGCACCGGTGCCGGGACGGCCAACAGAGTGAAGTGGAGGGGGTTCAAGGTTATGACCAGCGCTTCGGAGGCTCAGAGGTTTACTGCTGCCAACTTTATTGGTGGCTCTAACTGGCTGGCCTCCACTGGGTACCCTTTCTCTCTTGGTCTTTAG 1890 0.5153 MENSSLFESRLFLRFYITLTAHHSHHFTPTPFLFLSSQSLSSMSKFRQVFAGISDPGNHKRNIKIFLALFSTLLLLGPAVGIIVDVNSNQKSSDNLNFSSHPSHAIVKSACSPTLYPELCFSAISSEPEFTEKVSSHRDVIELSIKITTRAIEHNFFTVEKLKDNRKGSLTEREKTALHDCLEMIDETLDELHTVSEDLKIYPNKKTLYQHADDLKTLISAAITNQVSCLDGFSHDGADKKVRSALEAGQLHVEHMCSNALAMIKNMTDTDVANYEMKMGITKSRKLMAATSEGGVQWPEWMSAADRHLLQATGVRSDVVVAADGSGNFRTVSAAVAAAPENSKRRYVIRIKAGVYRENVEVPKKKTNIMFLGDGRRNTIITGRRNVVDGSTTFHSATVAVVGERFLARDITFENTAGPSKHQAVALRVGSDFAAFYQCDFLAYQDTLYVHNNRQFFINCLISGTVDFIFGNSAAVFQDCDIHARLPGSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATRDLEARKKSVKTFLGRPWKQYSRTVIMQSTITDVIDPAGWHEWNGNFALNTLFYGEYQNRGTGAGTANRVKWRGFKVMTSASEAQRFTAANFIGGSNWLASTGYPFSLGL 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1243 629 ProSitePatterns Pectinesterase signature 2. 462 471 IPR033131 -
Lele39g1243 629 CDD PMEI-like_3 109 268 - -
Lele39g1243 629 SUPERFAMILY Pectin lyase-like 314 628 IPR011050 -
Lele39g1243 629 Pfam Plant invertase/pectin methylesterase inhibitor 106 263 IPR006501 GO:0004857
Lele39g1243 629 ProSitePatterns Pectinesterase signature 1. 343 362 IPR018040 -
Lele39g1243 629 SMART PMEI_2 102 263 IPR006501 GO:0004857
Lele39g1243 629 FunFam Pectinesterase 312 629 - -
Lele39g1243 629 FunFam Pectinesterase 103 268 - -
Lele39g1243 629 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 106 268 IPR035513 -
Lele39g1243 629 Gene3D - 312 629 IPR012334 -
Lele39g1243 629 Pfam Pectinesterase 318 614 IPR000070 GO:0030599|GO:0042545
Lele39g1243 629 TIGRFAM PME_inhib: pectinesterase inhibitor domain 100 267 IPR006501 GO:0004857
Lele39g1243 629 Gene3D Invertase/pectin methylesterase inhibitor family protein 103 268 IPR035513 -
Lele39g1243 629 PANTHER PECTINESTERASE 80 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1243 Lele-ChrLele39 20996570 20998771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1243 100 629 Carbohydrate Esterase AT3G14310 71.507 0.0 799