Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1242 ATGAGCAAGTTCAGGCAAGTCTTCGCCAGGATCTCAGATCCCGGCAACCAAAAGAGAAACAAAAAGCTCTTTCTTGCTCTGTTCTCCACTCTGCTCCTCCTCGCCGCCGTTGTCGGTACCGTCGCCGGAGTTAACTCCCGCCAAAAATCTTCCGATAATTTGAATTTCTCCTCCCATCCATCCCATGCCATCGTCAAATCTGCTTGCAGCTCCACACTTTACCCTGAACTCTGCTTCTCCGCTATCTCCTCCGAGCCTGGATTCACCGAGAAAGTCTCTTCCCACCGCGATGTCATCGAATTGTCGATAAACATAACCACCAGGGCCGTTGAGCACAACTACTTCACCGTCCAGAAGGTAATCTCCAACAGGAAGGGAAGCCTCACGAAGAGAGAGAAAACCGCTCTTCATGACTGCTTAGAGACTATCGACGAAACGCTCGACGAGCTTCGCACCTCTTTGGAAGATCTGAAAATCTATCCGAACAAGAAAACTCTGTACCAGCACGCTGACGATCTAAAGACTCTGATAAGCGCTGCCCTTACCAACCAGGTCACGTGCCTCGACGGATTCTCTCACGACGGCGCCGATAAGAAAGTGAGAGGAGCTCTAGAGGCAGGGCAGGTACACGTGGAGCACATGTGCAGTAATGCTCTGGCGATGATTAAGAACATGACGGACACAGATGTGGCGAACTACGAGATGAAGATGGGGATTACAAAGAGCAGGAGGCTGATGTCTGGGACGTCGGAAGAAGGCGGGTTTCCGTGGCCGGAGTGGATGTCGGCGGCAGACAGGCACTTGTTGCAGGCAACGGGGGTGACACCTAACGTGGTAGTAGCGGCGGACGGGAGTGGAGATTTTAAGACGGTGGCAGAGGCAGTGGCTGCGGCGCCCGAGAAGAGTAAAACGAGATATGTGATTAAGATAAAAGCAGGAGTTTACAGAGAGAATGTGGAAGTTACAAAGAAGAAGACGAATATAATGTTCTTGGGAGATGGAAGACGTAACACTATCATCACGGGAAGCAGGAATGTTGTTGATGGAAGCACCACCTTCCATTCCGCCACAGTTGCTGTAGTGGGAGAACGATTCCTAGCTCGCGACATAACCTTTGAAAACACTGCCGGCCATGCGAAGCACCAAGCCGTCGCCCTCCGGGTAGGTGCTGACTTCGCCGCCTTCTACCAGTGCGACTTCCTCGCCTTCCAAGACACCCTCTACGTCCACAACAACCGCCAGTTCTTCATCAACTGCCTCATTGCCGGCACCGTCGACTTCATCTTTGGCAACTCCGCCGCCGTGTTCCAAGACTGCGATATCCACGCCCGCCTCCCCGGCTCTGGCCAGAAGAACATGGTCACCGCACAAGGACGAGTTGACCCCAACCAGAACACCGGCATCGTTATCCAGAAGTGCCGTATCGGAGCAACACAAGACCTGGAGGCAAAGAAGAAGGACTTCAAGACCTTCCTCGGCAGGCCATGGAAACAGTATTCGAGGACGGTGATAATGCAGACGAGCATAACAGACGTGATCGATCCGGTGGGATGGCACGAGTGGAATGGGGATTTCGCTTTGGACAGTCTGTTCTACGGGGAGTATCAAAATACTGGCGCCGGTGCCGGAACGGCGAACAGAGTGACGTGGAAGGGGTTCAAGGTTATAACCAGTACTTCGGAGGCACAGCAGTTCACTGCCGCCAACTTTATTGGTGGCTCTAACTGGTTGGGCTCCACTAGTTTTCCTTTCTCTTTGGGTCTGTAG 1767 0.5286 MSKFRQVFARISDPGNQKRNKKLFLALFSTLLLLAAVVGTVAGVNSRQKSSDNLNFSSHPSHAIVKSACSSTLYPELCFSAISSEPGFTEKVSSHRDVIELSINITTRAVEHNYFTVQKVISNRKGSLTKREKTALHDCLETIDETLDELRTSLEDLKIYPNKKTLYQHADDLKTLISAALTNQVTCLDGFSHDGADKKVRGALEAGQVHVEHMCSNALAMIKNMTDTDVANYEMKMGITKSRRLMSGTSEEGGFPWPEWMSAADRHLLQATGVTPNVVVAADGSGDFKTVAEAVAAAPEKSKTRYVIKIKAGVYRENVEVTKKKTNIMFLGDGRRNTIITGSRNVVDGSTTFHSATVAVVGERFLARDITFENTAGHAKHQAVALRVGADFAAFYQCDFLAFQDTLYVHNNRQFFINCLIAGTVDFIFGNSAAVFQDCDIHARLPGSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATQDLEAKKKDFKTFLGRPWKQYSRTVIMQTSITDVIDPVGWHEWNGDFALDSLFYGEYQNTGAGAGTANRVTWKGFKVITSTSEAQQFTAANFIGGSNWLGSTSFPFSLGL 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1242 588 SMART PMEI_2 60 221 IPR006501 GO:0004857
Lele39g1242 588 FunFam Pectinesterase 271 588 - -
Lele39g1242 588 PANTHER PECTINESTERASE 32 578 - -
Lele39g1242 588 Pfam Plant invertase/pectin methylesterase inhibitor 64 221 IPR006501 GO:0004857
Lele39g1242 588 ProSitePatterns Pectinesterase signature 2. 421 430 IPR033131 -
Lele39g1242 588 Pfam Pectinesterase 277 573 IPR000070 GO:0030599|GO:0042545
Lele39g1242 588 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 64 226 IPR035513 -
Lele39g1242 588 CDD PMEI-like_3 67 226 - -
Lele39g1242 588 SUPERFAMILY Pectin lyase-like 273 587 IPR011050 -
Lele39g1242 588 Gene3D - 271 588 IPR012334 -
Lele39g1242 588 FunFam Pectinesterase 61 226 - -
Lele39g1242 588 TIGRFAM PME_inhib: pectinesterase inhibitor domain 52 225 IPR006501 GO:0004857
Lele39g1242 588 Gene3D Invertase/pectin methylesterase inhibitor family protein 61 226 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1242 Lele-ChrLele39 20991046 20995436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1242 4 588 Carbohydrate Esterase AT3G14310 66.555 0.0 796