Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1241 ATGGATTCTATCAAGTCCTTCAAGGGCTACGGCAAGGTGGATGAGCTCGAGCAGAGATCTTTCCAGAAGAAGACACGTCGCCGCCTCATTATCCTCGGCGTCTCCTGCATTGTCCTCGTCGCCATCGTTGCCGCCGCTGTCGGTGCCACCGTCATTCACAAGCGCAGCCACTCCTCCTCCTCCGATTCCGTCCCTCCCACTGAGTTGACTCCGGCCTCCTCGCTCAGAGCCGTCTGCGCTGCCACTCAGTACCCCAGCTCGTGCTTGTCCAGCATCTCCTCCCTCCCTGATTCTAACACCACCGATCCGGAGCTTCTCTTCAAGCTCTCCCTCCGAGTTGCCGTTGATGAGCTCTCTAAACTCTCGAAGCTTCCCTCCAAACTCAAAGCCAATGTGAAGGATCCGCGGCTTCAGAAGGCGATCGATGTGTGCGGAATCGTGTTCGATGACGCGGTGGATCGACTCAACGAGTCGGTCTCTTCGCTGGCGGTCGGCGGAAATGGTGGGAAGATCCTCTCCGCGTCGAAGATCGGCGACCTTGAGACTTGGCTGAGCGCTTCGATTACTTACCAGGAGACTTGTCTGGACGCTCTGGAGGAGTTGAATTCCACCGCCGCAAGCGAGATTCTCGGGGATCTGAAAACCGCGATGAAGAATTCAACCGAGTTCGCGAGTAATAGTTTGGCAATTGTGACGAAGATTCTAGGTCTTCTCTCTAATCTCAACATCCCGATCCATCGGAGGCTGCTCGGATTCGGGGGATCCGATTCTGGTTTTCCGGATTGGGTTGGCCCCGCGGAGAGGAGGCTGTTGGTGGACACGAACACAACAGCGCCGCATGCGGTGGTAGCAAAGGATAACAGTGGTCAGTATACGACGATAAAGGCGGCGTTGGCGGCCGTGAAGAAGAAGAGCCTAACGAGGTTTGTAATCTATGTGAAGGAAGGGGTTTACGAAGAAAATATCGATTTGGATAAGAACATTTGGAATGTGATGATATTCGGTGATGGCAAGACCAAGACCATCGTCTCCGGTAGCCTGAACTTCATCGACGGCACGCCTACTTTTGCAACAGCTACTTTCGCCGTCAAGGGGAAGGGATTCATCGCCAAAGACATAGGATTCATCAACACCGCCGGAGCAGCCAAGCACCAGGCGGTGGCTTTCCGATCAGGCTCCGACCAATCCGTGTTCTTCAGGTGCTCCTTTGACGGCTTCCAAGACACTCTCTACGCCCACTCCAACCGTCAATTCTACCGAGAATGTGACATCACCGGCACCATCGACTTCATCTTTGGCAACTCCGCCGTGGTCTTCCAGAACTGCAACATCAAGCCGAGACAACCTTTGCCTAATCAATTCAACACCATCACGGCTCAGGGCAAAAAGGATCCTAACCAGAACACCGGAATTATCATCCAGAAATCCACGTTCTCTGCGGGTGACAATCTCACCGCTCCAACGTACCTTGGCCGGCCATGGAAGGAGTACTCCACCACAGTGATCATGCAGTCTGATATAGGATCATTCTTGAACCCGGTGGGCTGGAAAGAATGGGTTTCGGGCGTGGAGCCCGCGAGCACCATATTATACGCTGAGTATAAGAATACAGGAGCCGGGTCGGGCGTGGATAAGAGGGTCAAATGGGCGGGTTATAAGTCAAGCCTATTTGAGAATGAGGCAGCTAAGTTCACGGTTCAGTCTTTTATCCAAGGGACTGACTGGTTACCAAATACCACCGTGATGTTCGAATCCACTTTGGATGAGCTTGGACTGGATCTGCTCTCTGGAAGTGATCTTCTTGAAATTCAGGTGACAGGCTTCAATTTCTTGGCCGAAGTTTCTTGGGGAAGCAACCACACGAACGGTGATTTGAAAAATGCGGTTTATGGCGGGCCATCATCTTCTGAGCATTTTCTGTCGCCTTCTGGATCTGCTCTTGGTGCTGCTCTTTCGCTGCGTCTCTCCATTCCTCGGCTTTTCTGTTAA 1989 0.5284 MDSIKSFKGYGKVDELEQRSFQKKTRRRLIILGVSCIVLVAIVAAAVGATVIHKRSHSSSSDSVPPTELTPASSLRAVCAATQYPSSCLSSISSLPDSNTTDPELLFKLSLRVAVDELSKLSKLPSKLKANVKDPRLQKAIDVCGIVFDDAVDRLNESVSSLAVGGNGGKILSASKIGDLETWLSASITYQETCLDALEELNSTAASEILGDLKTAMKNSTEFASNSLAIVTKILGLLSNLNIPIHRRLLGFGGSDSGFPDWVGPAERRLLVDTNTTAPHAVVAKDNSGQYTTIKAALAAVKKKSLTRFVIYVKEGVYEENIDLDKNIWNVMIFGDGKTKTIVSGSLNFIDGTPTFATATFAVKGKGFIAKDIGFINTAGAAKHQAVAFRSGSDQSVFFRCSFDGFQDTLYAHSNRQFYRECDITGTIDFIFGNSAVVFQNCNIKPRQPLPNQFNTITAQGKKDPNQNTGIIIQKSTFSAGDNLTAPTYLGRPWKEYSTTVIMQSDIGSFLNPVGWKEWVSGVEPASTILYAEYKNTGAGSGVDKRVKWAGYKSSLFENEAAKFTVQSFIQGTDWLPNTTVMFESTLDELGLDLLSGSDLLEIQVTGFNFLAEVSWGSNHTNGDLKNAVYGGPSSSEHFLSPSGSALGAALSLRLSIPRLFC 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1241 662 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 235 IPR035513 -
Lele39g1241 662 SMART PMEI_2 70 230 IPR006501 GO:0004857
Lele39g1241 662 CDD PMEI-like_3 77 234 - -
Lele39g1241 662 PANTHER PECTINESTERASE 36 579 - -
Lele39g1241 662 FunFam Pectinesterase 274 587 - -
Lele39g1241 662 FunFam Pectinesterase 71 235 - -
Lele39g1241 662 Pfam Plant invertase/pectin methylesterase inhibitor 74 230 IPR006501 GO:0004857
Lele39g1241 662 SUPERFAMILY Pectin lyase-like 276 583 IPR011050 -
Lele39g1241 662 ProSitePatterns Pectinesterase signature 2. 424 433 IPR033131 -
Lele39g1241 662 Gene3D - 274 587 IPR012334 -
Lele39g1241 662 TIGRFAM PME_inhib: pectinesterase inhibitor domain 63 234 IPR006501 GO:0004857
Lele39g1241 662 Pfam Pectinesterase 281 572 IPR000070 GO:0030599|GO:0042545
Lele39g1241 662 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 235 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1241 Lele-ChrLele39 20983212 20986982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1241 1 582 Carbohydrate Esterase AT1G53840 60.272 0.0 700