Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1235 ATGATGTTTCATCCTGGAGGAATTCCCAAGCAAACTTGCAGTCTACTGGCTGTCACATCTGGTAAAAGCGTTGAGCATAATTTCGACAAGAAACTCACTCAGAATCAGCTCAAATATCCCTTTCCCGAGTTAACTTCTTCAGGGCGTCTGGAGGTTCAAACTCTAAACAATCCAGAAAAAGAACAGTTTCGAAAAGTTCTCGAGTCTTTTCAACCAAATTTTGTATATTTGCAAGGAGAACAGCTTGCAAATGGTGAAGTTGGTTCTTTGGTCTGGCAAGGCGAAGAATTGGCTACCTCGGAAGCTATATCAGAGCTATTTGGTCCCACATTGCCAACAGCTGTATACTTGGAAATCCCAAACGGGAAAAATTTGGCAGAAACTCTTCATCTTAAGGGAGTTGCATATGTGATTTATTGGAAAAGCACTTTTTCTTGTTATGCTGCTTGCCATTTTCGTCAAGCATTTCTTTCAGTGGTGCAGAGCTCTTCTACGCATACATGGGATGCCTTTCGCCTTGCCCGTGCTTCTTTTGAGTTTTATTGTGTTCAAAACAATCAAGTTCTTCCTGGTGAGAAACATGATTCTAGTGACAATATAGGGCCACACCTTCTTGGAGATTATCTTCAAATCAATATTGACCCTCCTGAGGTGTGTGAAGATGATGAGGAAAGTTCCTCAGGCAGTCTTCCTGCTATAAATATACATGATGATGAAGTGAACTTGAGGTTTCTCATCTGTGGTTCACCTTCAATTGTGGATGAGTCACTAATGAGATCATTGGAGGATGGACTCAAAGCACTCTTAAATATTGAAATACGGGGTAGCAAACTCCATGGCAAGTTTAGTGCTCCCCCACCACCTCTTCAAGCAGCCACTTTTTCTCGAGGAGTTGTGACCATGAGATGTGATATATCAACCTGTAGTTCAGCCCACATCTCACTTCTGGTGTCTGGTAGTGCTCAAACTTGCTTCAATGATCAGTTATTGGAGAATCATATAAAAATTGAGATAATTGAGAAGAGTCAACTGGTTCGTGCCCAAATTGATGTGGGAAACAAACAGCATGTCTCTGAACCTCGTAGATCTGCCTCAATTGCTTGTGGAGCAGCTGTATTTGAAGTTTGCATGAAGCTTCCTCTATGGGCTTCGCAGGTATTGAGACAGCTAGCTCCTGATATTACTTATCGAAGTTTAGTTGCACTTGGGATTGCTAGCATTCAGGGGTTGCCTATTGCTGCATTTGAGAAAGATGATGCCGAGCGCCTGCTTTTCTTTTATCAAAGTCCAGAGAAAGATAGTGATGCAGACAAAATCATTTTCAGCAGGCCCCCTGTTTGGTTGAAACCACCCCCTCCCACTAGAAAAAAGTGTGAGCCAAGTCAAGAGGCAAGCCCTGGCCTTCAAGATGGTGTTTTAACTGAGCAAGGTACTATTCAAAAAGTAGATGAAGAGGAAAAGGATACAAAATTGGTGAATGGAATTGGCACATCCTTAACTCCAGCTAGGCAGAGACTAAAAGTGTCTGCAATGAGGCCCATCCCTCACATTCATCGCCATAGAATGACTCTCTTTTCTGGACCTTCTGAGACAGATGGTTATGATGGTGCCCAAGTTGAAGCTAGTTTACCACTTGTTGTCCCTGCAAAGCGCAGTAATACTGGTTCAAGTTCTGCAACACAGAGAAGGTCATTTTTAGGCTCAGCTCAGTCTAAGCAGATTATTTCCTTGAACCCACTGCCCTTGAAAAAACACGGTTGTGGCAGAGGCCAGATCCAAACTTGCTCTGAGGAGGAATTTTTGAAAGATGTCATGGACTTTCTAATGCTTCGAGGACACAATCGATTAATTCCTCAAGGTGGTATAGTTGAGTTTCCTGATGCCGTACTCAATGGGAAACGGCTTGATCTGTACAACTTGTATAAAGAGGTGGTTACCAGGGGAGGATTCCATGTTGGTAATGGCATCAATTGGAAAGGACAAATCTTCTCAAAGATGCGCAATTACACAACCACCAATAGAATGACTGGCGTTGGAAATACACTCAAAAGGCATTATGAAACTTACCTTCTAGAATATGAATTAGCACATGATGATGTGGATGGAGAGTGCTGCTTGTTGTGTCGCAGTAGCGCGGCTGGGGATTGGGTGAATTGTGGCATATGTGGCGAGTGGGCCCACTTTGGCTGTGACAGACGGCAAGGTCTTGGTGCATTTAAGGATTATGCAAAAACAGACGGACTAGAATATATTTGTCCTCATTGTAGCATAACAAATTTCAAGAAGAAACCCTCAGGTGTTGCTAATGGATTTTCTCAGGGGTCATTGGCATCAAAACATCTTTGA 2346 0.4284 MMFHPGGIPKQTCSLLAVTSGKSVEHNFDKKLTQNQLKYPFPELTSSGRLEVQTLNNPEKEQFRKVLESFQPNFVYLQGEQLANGEVGSLVWQGEELATSEAISELFGPTLPTAVYLEIPNGKNLAETLHLKGVAYVIYWKSTFSCYAACHFRQAFLSVVQSSSTHTWDAFRLARASFEFYCVQNNQVLPGEKHDSSDNIGPHLLGDYLQINIDPPEVCEDDEESSSGSLPAINIHDDEVNLRFLICGSPSIVDESLMRSLEDGLKALLNIEIRGSKLHGKFSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLENHIKIEIIEKSQLVRAQIDVGNKQHVSEPRRSASIACGAAVFEVCMKLPLWASQVLRQLAPDITYRSLVALGIASIQGLPIAAFEKDDAERLLFFYQSPEKDSDADKIIFSRPPVWLKPPPPTRKKCEPSQEASPGLQDGVLTEQGTIQKVDEEEKDTKLVNGIGTSLTPARQRLKVSAMRPIPHIHRHRMTLFSGPSETDGYDGAQVEASLPLVVPAKRSNTGSSSATQRRSFLGSAQSKQIISLNPLPLKKHGCGRGQIQTCSEEEFLKDVMDFLMLRGHNRLIPQGGIVEFPDAVLNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCRSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSITNFKKKPSGVANGFSQGSLASKHL 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1235 781 CDD PHD_ARID4_like 704 755 - -
Lele39g1235 781 CDD ARID 596 694 - -
Lele39g1235 781 Pfam ARID/BRIGHT DNA binding domain 597 694 IPR001606 GO:0003677
Lele39g1235 781 MobiDBLite consensus disorder prediction 450 470 - -
Lele39g1235 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 700 756 IPR013083 -
Lele39g1235 781 ProSiteProfiles ARID domain profile. 594 698 IPR001606 GO:0003677
Lele39g1235 781 Gene3D - 589 699 IPR036431 GO:0003677
Lele39g1235 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 8 775 IPR042293 -
Lele39g1235 781 SMART ARID_2 591 694 - -
Lele39g1235 781 SMART bright_3 595 699 IPR001606 GO:0003677
Lele39g1235 781 SUPERFAMILY FYVE/PHD zinc finger 690 757 IPR011011 -
Lele39g1235 781 SUPERFAMILY ARID-like 594 708 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1235 Lele-ChrLele39 20953085 20959734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1235 2 770 ARID Transcription Factor Family AT3G43240 59.508 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele39g1235 ARID 7.7e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0187 37 1498639 1505307 Lele39g1235 39 20953085 20959734 hybridization
Lele38g0194 38 1543367 1550975 Lele39g1235 39 20953085 20959734 hybridization