Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1233 ATGTGTGGAGGTGCTATTATCTCCGACTTCATCCAGACGCCAGAGGACAGGTCCCGGCGGCTCACCGCTGATTTCCTCTGGCCGGATTTGAAGAAACCCAGATGGGGGAAGCGACTCTCGAAGCCCACCAGGTCTGCGTTCGGGGATTTAGACGATGATTTCGAAGCTGATTTTAGGGAATTCAAGGACGAGTCTGATATCGATGAGGTGGATGTGGATGATGATTTGCTGTTCAATTTCAAGAACATAGGTTTCTCTGCAGCCAAACCCCCCAGGCCTTCCAGATCTCTGTCTCATGGATCTGGTGCTGTAAACTCTATGAAATTCAATGGGAAAGCTAACAAGTTAGAGAAAAGAAAGAGGAAGAATCTGTATAGGGGAATCCGTCAGCGCCCATGGGGAAAATGGGCAGCCGAGATCCGTGACCCAAGGAAAGGAGTCCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCAGCTAGAGCCTATGATGCTGAAGCACGTAGGATTCGTGGTAAGAAAGCCAAGGTGAACTTTCCTGATGAGGCCTCAGACTCTCCCCCAAAACATTTCAATGTAAAACACTCTGTCCAGCCTGTTATGAACCAGAAATTCAATTTTGGAAACAATCCAAAGGATTACTTCTCTCCTGTGGGTCTGATGGAGCAGAAACCACTGGTTAATCAGTATGCTAACATGGGAGTCTTACTCAGCAGTGCAGATGGGCTCACATCTTTTACACCATTGGACGATGTTAACGGCCCTGTTTGTTTCAGTTCGGATCAAGCAAGTAATTCGTTTGGTTATTCTAGTATTGGCTGGGGCGAACAGGGCCCAAAGACTCCTGACATCTCTTCAATGCTTTCTGCTTCTATAGAAGATGAATTTCAAGCTGTTAGTGACGCCAACCAGAATAATGACATTCCTAACTCTCAGGTGTGTGTGTTGCCTCTGGGAAATGATTCTGCAAAGACACTGTCTGAGGAACTTGCTGATATTGAATCCCAGTTGCAGTTCTTTAAGACGCCTTACCTTGAAGGGAGCTGGGACGTTGCTTCGTTAGAATCCTTGCTTGGTGAAAACACAACTCAGGATGGCGAAAACCCAATGGACTTTTGGAGCTTTGATGATCTACCTTCCATGCCTGGGGGAAGTTACAAGAATCTTGTTGATCTTTGTTGGAGATTGAGTCAATACAAAACAAAACAGACCGCTTTAAGCATGCCTGGATGGTTATCCTGTGGACGCCGGTAG 1257 0.467 MCGGAIISDFIQTPEDRSRRLTADFLWPDLKKPRWGKRLSKPTRSAFGDLDDDFEADFREFKDESDIDEVDVDDDLLFNFKNIGFSAAKPPRPSRSLSHGSGAVNSMKFNGKANKLEKRKRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDEASDSPPKHFNVKHSVQPVMNQKFNFGNNPKDYFSPVGLMEQKPLVNQYANMGVLLSSADGLTSFTPLDDVNGPVCFSSDQASNSFGYSSIGWGEQGPKTPDISSMLSASIEDEFQAVSDANQNNDIPNSQVCVLPLGNDSAKTLSEELADIESQLQFFKTPYLEGSWDVASLESLLGENTTQDGENPMDFWSFDDLPSMPGGSYKNLVDLCWRLSQYKTKQTALSMPGWLSCGRR 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1233 418 MobiDBLite consensus disorder prediction 89 113 - -
Lele39g1233 418 SUPERFAMILY DNA-binding domain 124 183 IPR016177 GO:0003677
Lele39g1233 418 ProSiteProfiles AP2/ERF domain profile. 124 181 IPR001471 GO:0003700|GO:0006355
Lele39g1233 418 Pfam AP2 domain 125 173 IPR001471 GO:0003700|GO:0006355
Lele39g1233 418 PANTHER DNA-BINDING DOMAIN 106 260 IPR044808 GO:0003700|GO:0009873
Lele39g1233 418 CDD AP2 125 182 IPR001471 GO:0003700|GO:0006355
Lele39g1233 418 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Lele39g1233 418 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Lele39g1233 418 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
Lele39g1233 418 Gene3D AP2/ERF domain 124 182 IPR036955 GO:0003700|GO:0006355
Lele39g1233 418 FunFam Ethylene-responsive transcription factor 2 123 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1233 Lele-ChrLele39 20941546 20944468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1233 1 387 AP2-EREBP Transcription Factor Family AT1G53910 44.949 6.99e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele39g1233 AP2 1.8e-12 CL0081