Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1218 ATGGCGGATTCTTCCTTTGAATTCGACTACAACTCCTCAGGCCAACACTATCCCACGCAACGCTACCCCTCGACCCCAGTGAGTTCTCGCAATACGTCTCGGTCTTTTACGGAGGCGTGGAGCTCCCGGGGAAACCACAATTCTGGACTTGGGCGCAGGAACAGGGCTCCGGCTATTCCCATTAACTCCGACGACGACCGTTCATGGCAGACAGAAGTTTCGTGGCAATTTGAGCCCACTGGGTGGCGGGAGTACGGTAATAGAAACTTGGGCTCTATTTTCACTCCATGGGCCGAAAGCCCGATTCAATCAGATCGGAGTCGGGTTTTCCGTCGGTCCGCTAGAGATTATTACCTTTCAAGAACGAGCGGGTTCGCCAGGGGAAACCTCTTTGCCGCCAACTCGGATTCTGAAGCTTCAGGCTACGTCATTCCGTCTGGGAGAGTCGAGCTTCAGAGCTATGTCGCTGAGGAGAATGGCGATCAGAATAGCAAGTCTTATAGTGGATTTTCGAGATTGGATATCATCAAAGAAGGAATTATTGGTACTAGAAAGGGGAAGAATATTCCATTGGCGGAAGAAGATGAACTTAGTTTTACGTCTTTTAGTGTTGGTCAAGAACCAAAACTGTCATATACGAAACATGATAGTTGTAGTGGTCCTGGGAAGATAGTGCCAGTGCATTTCAGCCATGGCGACAGCGGGTATGGTCATCATCATGGGATCGACAAGTTTTCTGGGTTTCGTGAAGATAGTGATCAGGACGATATGGGTTATGATGATGAAGATTTGGAGCCTCCAAAAGCAGTTGGGTTGTTCAGTTTGTTTCGGTACTCCAAAAAGTGGGATTTAGTGCTTGTGTTTTTTGGTTGCTTGGGGGCTCTCATAGATGGAGGTTCACTTCCTTGGTATTCTTATCTTTTTGGACAAGTAGTCAATAAACTTTCTGAACAATCAAGAGATGGTGCTGACAAAGACCAGATAATGAAGGATATAGTCATGATATGCATGTATATGACTGTGTTATCTGCAGTGGTGATGGTTGGAGCATATATGGAGATCACATGTTGGAGGTTGGTAGGAGAGCGATCTGCTCAAAGGATAAGAAGAGAGTATCTAAGAGCAGTTCTTCGTCAGGACATTAGCTTTTATGATACAGAGATATGCACTTCTGATATTATGCATGGGATTGCAAGCGATGTTGCACAAATTCAAGAAGTTATGGGAGATAAGATGGCTCACTTCGTTCATCATCTATGCACATTCATAACTGGGTATATAGTTGGGTTTGTGAGGTCATGGAAAGTTGCTCTGGTGGTCCTCTCAGTCACCCCAGTGACCATGTTCTGTGGTATAGCTTACAAGGGCATTTATGGTGGTTTATCAACAAAAGAGGAAGCTTCTTATAGAATGGCAGGTAGCATTGCGGAGCAGACCATCAGTTCAATTAGGACAGTTTTTTCTTTTGTTGCTGAAAGTCAGATGGCTATAAAATATTATGACCTGCTGAAAAATTCAATCCCAGTTGGGGTCAGAATTGGTTTTGCCAAGGGTGCAGGTATTGGAGTCATCTATTTAGTAACGTACTCAACATGGGCCTTGGCTTTCTGGTATGGTTCTATCTTAATTGCCAAGGGAGAGATTGATGGAGGTCGGGCCATTGCCTGTTACTTTGGAGTCATGGTAGGGGGAAGAGGCTTGGCCTTGGCACTTTCATATTTTGCGCAGTTTGCACAAGGCATTGTTGCAGCAAGCCGAGTATTTGAAATCATTGAGAGAGTCCCTGAGATTGATCCCTACAGCCCTGAGGGAAGGAGGCTCTCTAATTTTCGTGGAAGGATTGAGTTCAAAAGTGTTATCTTTGCATACCCAGCTCGTCCTGATGCTCTAATCCTTAATTCCCTTAAATTAGTTATTCCGTCTTCAAGAACTACGGCACTGGTTGGTGCCAGTGGAGGGGGCAAGTCCACTATTTTTGCTCTAGTAGAGAGGTTTTATGACCCTATTGAAGGGATAATAACCTTAGATGGTCATGATTTGAGGACACTGCAAGTCAAGTGGCTTAGAGATCAAATTGGAATGGTGGGTCAGGAACCGATTCTTTTTGCCACAACCATTCTGGAAAATGTGATGATGGGGAAGGACAACGCCACCAAGAAAGAAGCAATTGCTGCTTGCATTGCGGCTGATGCCCACAACTTCATCTCTATCCTACCCCTACGTTATGACACTCAGGTTGGAGCTAAGGGTACGCAACTCTCAGGGGGTCAAAAGCAGCGAATTGCATTGGCTAGAGCTATTATCAAAGATCCTAAAATCCTTCTATTGGATGAACCTACCAGTGCTCTTGATGCTGAGTCAGAGTCTGTGGTCCAACAAGCTATTGACAAGATTTCTGCTGGACGAACAACCATTGTCATCGCTCACAGGATAGCAACAGTAAAGAATGCTCATACTATTGTGGTTCTTGAAAATGGTTCTGTGACTGAGATTGGTGATCATCGACAGCTTATGGGAAAGGCGGGTGCCTACTATAACCTTGTCATGCTTGCTTCGGAAGCTGCATCAAAACCAGTGTCTAACAGCATACAAAAGGTTAATGATTTTTCTGTCTATGAGAACTCAGTTCCTGATGTAACAAGATCAAGAAGTACTTTAGATATCTCACGGTCCAACTTGAAATCTACTCGAAATGAAAAACAAGCTGATATGGAAGATGAGCAACAGAAGCCCAGAAAGTTTCAACTTTCTGAGATATGGAAACTGCAAAAACCGGAGTTTGTGATGCTGTTTTCAGGATTTGTTCTGGGTATGCTTGCTGGTGCTTTTCTCTCCATTTTTCCATTGATTTTAGGCTTAGCCCTTGAAGTCTACTTTAAACAGGACACTTCAACAATGAAAACAGATATTAACCATCTATGTTTAGTACTTGTTGGGCTAGGGTTTGGTTGCATAATCTCTCTGACTGGACAACAAGGTTTGTGTGGTTGGGCTGGAACTAAGCTCACAATCAGAATTAGAGACCTTCTTTTTCGATCCATACTAAAACAAGAACCCGGGTGGTTTGATTTTGAAGAAAACTCCGCTGGAGTGCTAGTGTCAAGGCTATCTATTGACTGTATTAGTTTTCGATCAGTGCTTGGTGATCGAGTTTCTGTCCTTCTAATGGGACTGAGCTCAGCTGCTGTTGGGCTTGGTGTGTGCTTTAAATTTGATTATAGAATAACTCTGTTGGCTGCTACACTAACCCCTTTCACTCTTGGTGCAAACTATCTAAACTTGATTATAAACCTTGGTCCACGAGTCAACAATGATTCCTTTGCCAGAGCTAGTAGCATCGCTTCTGGTGCAGTTTCAAACATAAGAACAACTAGTGCATTTTCTGCCCAAGAACAGATAGTCAAATCCTTTGATCGAGCTTTATCCGAACCTAGGGAAAAATCAGTAAAAAGATCGCAGATTCTTGGTGTAATGCTTGGGTTCTTCCAAGGTGCCATGTATGGAGCATACACCTTAACCCTTTGGTTTGGGGCCCTCCTTGTAAAACAAGGCAAAGCACAATTCGGGGATGTAGTTAAGATTTTTCTCATCCTTGTTTTGAGCTCATTTTCTGTGGGACAACTAGCTGGTTTAGCACCAGATACTTCTTTGGCAGCTACAGGAATCCCAGCTGTTCTAGATATCATACACCGTGGACCATTGATAGGGAATGATAAGATGAAAGTTAAGAAACTAAAAAGATCAGAGCTATTGAAGCTAGAATTCAAAATGGTGACATTCGCGTACCCATCTAGGCCTGAAGTGATAGTGTTGAGGAATTTCAATTTGAAGGTCAAAGGTGGAAGCACGGTTGCCTTGGTAGGGGCAAGTGGATCAGGAAAATCAACAGTCATATGGTTGATACAGAGGTTCTATGATCCAAACCAGGGGCAGGTGATGATGGGTGGTTTGGATTTGAGAGACATTGATGTGGAGTGGTTGAGGAGGCAAACAGCTTTGGTGGGTCAAGAACCTGCACTGTTCGCTGGGAGTATAAGGGAGAATATTGCCTTTGGAAACCCGGAAGCTTCCTGGGCTGAAATTGAAGTCGCGGCAAAGGAAGCTTACATTCACAAATTCATTAGTAGCCTTCCTCAAGGTTATGAAACTCAGGTTGGTGAGAGTGGGGTCCAGCTATCAGGTGGCCAAAAACAGAGCCAATGCCTTCACTGGTTTTCGATGATGTCTCACCGTGATAAGGCACACAATGGTGAGGAAATATCATTTGGATACAGATTGCTATTGTCCACTTCAATGTGTTGTAGAATCTCTCATCACTCCCACTTCGCCAAAAGGGCCTCTTTGATTTCTCTTTTTGACATTTCTCTTCGCTTTTATGCTTCAACCCACAGTGGAAAAAGAGGAATGGCTTCCCTTGTACCTGGGGTTCTACTGAAGCTTCTCAAGACTATTAATTCTGATGTGAAGGTTCTCGGGGAACACCGATCGGTACTTCTTCAGGTGATCAGTATCGTGCCTGCCTTAGCTGGGTCGGAATTATGGCCTAACCAAGGTTTCTTCATAAAAGTATCTGACTCTTCTCATTCAACCTTTGCTTCACTCTCAAATGAAGACAATGAACTGATTCTGAACAATAAGTTGCAGCTTGGGCAGTTCTTCTATGTCGAAAAAATGGAGGCAGGAACACAAGTTCCTGTTCTTGTTGGGGTAAGACCAGTTCCTGGAAGGCACCCTTTTGTGGGAGATCCTAAGGATTTAATGCAGATTTTAGATCCATCATCAGAGGGCAATGTAGAAACTGAAAATATTGAAGGTGTACTTAAAGAGACTCAAAGTCCTAGGAAGAAGAAGATTTTTATTAAGGAGGAAAAAGCTGGAATTGCATCCAGGTATATGCAGGGTGTTCCAACATCAATGAAGGTGAATGGACCAGATAGTAATAATGGAGGAAACAGAGGAAATGGTTTAGAAAATGGAAGCGGTCAAAAAGTTGGTTCAGCTAAAAGAAAGCAAAAGGAGATTAAAGGTAAGGTGCCTGCAATGATTCCAACATGTGATCGGCCTGAAGCACTTCCAACAAAGCAAGAGTCTGCTCAATGTAACATCAAGGAGACTGCTATAGTGCCTTCTAAGAGCAGTTCTTCAAAAAGCAGTTCTCCCAAACAGGAAATTTTGGACTCGAACTTTGTCTCTAGCAGCAAAAATAAGAACTATACCTCAGAGGCAATTCCATGGTCCTCTTTGTCTCGCAGCCTCTTGAAGCCTAGCAAGGGAATGCTTAGAAGGAAACATTTAGCTTCTATGGTTGCAGTTGAAGCTCAAAGAGAAGCATCTTCTGCATCAATCCTTGTCAGGTGCCTAAGTATGTTCGCCAATCTCTGTTCTTCTGCAGCATCAGAGAATCCCCACCCCACTCTGAACAAGTTCTTTGCCCTCCAACTGCTGATGGACCAAAGAAACGCCAAAACCTCATTAAAAGACAAATCACTTGAGTCAAGCAATTTACCATCTCATGGAAAAACAGATAAATCTGGCAGAAAGACAAGCTTAGTCCCATGTAAAAATAATACCACCTCGAAGTCTGCAAAACCTCAAATAGAACTATCACTGTCTGGGAAACTAGAATGGGCCAATGGTGATGGTCTAAAAGAGGCAAATGAACTGAGACAAATCCTCATAAAAGAGACAAGATCATGGTTTTTGAACTACTTAGAGAAGACATTGGATTCTGGGTTTTCTTCCTCAGGAACCCAAGGGAAAAAGGACAGAGTCAATAAGGATATTGCTCTCACATTATCACACCTTAAAAATGCAAAAGAGTGGTTAGATAAGCTGAGAAGCACTCTTGACTCTGAGAATGAAGAGATGGTTGAGAATGTTGAGAGATTGAAGGAGAAGGTTTGCTCCTGCTTGATGGTTCAAGTTGGTTCTGCTGCATCAGCTTTGGAGAAACGTGCTTGA 5961 0.4335 MADSSFEFDYNSSGQHYPTQRYPSTPVSSRNTSRSFTEAWSSRGNHNSGLGRRNRAPAIPINSDDDRSWQTEVSWQFEPTGWREYGNRNLGSIFTPWAESPIQSDRSRVFRRSARDYYLSRTSGFARGNLFAANSDSEASGYVIPSGRVELQSYVAEENGDQNSKSYSGFSRLDIIKEGIIGTRKGKNIPLAEEDELSFTSFSVGQEPKLSYTKHDSCSGPGKIVPVHFSHGDSGYGHHHGIDKFSGFREDSDQDDMGYDDEDLEPPKAVGLFSLFRYSKKWDLVLVFFGCLGALIDGGSLPWYSYLFGQVVNKLSEQSRDGADKDQIMKDIVMICMYMTVLSAVVMVGAYMEITCWRLVGERSAQRIRREYLRAVLRQDISFYDTEICTSDIMHGIASDVAQIQEVMGDKMAHFVHHLCTFITGYIVGFVRSWKVALVVLSVTPVTMFCGIAYKGIYGGLSTKEEASYRMAGSIAEQTISSIRTVFSFVAESQMAIKYYDLLKNSIPVGVRIGFAKGAGIGVIYLVTYSTWALAFWYGSILIAKGEIDGGRAIACYFGVMVGGRGLALALSYFAQFAQGIVAASRVFEIIERVPEIDPYSPEGRRLSNFRGRIEFKSVIFAYPARPDALILNSLKLVIPSSRTTALVGASGGGKSTIFALVERFYDPIEGIITLDGHDLRTLQVKWLRDQIGMVGQEPILFATTILENVMMGKDNATKKEAIAACIAADAHNFISILPLRYDTQVGAKGTQLSGGQKQRIALARAIIKDPKILLLDEPTSALDAESESVVQQAIDKISAGRTTIVIAHRIATVKNAHTIVVLENGSVTEIGDHRQLMGKAGAYYNLVMLASEAASKPVSNSIQKVNDFSVYENSVPDVTRSRSTLDISRSNLKSTRNEKQADMEDEQQKPRKFQLSEIWKLQKPEFVMLFSGFVLGMLAGAFLSIFPLILGLALEVYFKQDTSTMKTDINHLCLVLVGLGFGCIISLTGQQGLCGWAGTKLTIRIRDLLFRSILKQEPGWFDFEENSAGVLVSRLSIDCISFRSVLGDRVSVLLMGLSSAAVGLGVCFKFDYRITLLAATLTPFTLGANYLNLIINLGPRVNNDSFARASSIASGAVSNIRTTSAFSAQEQIVKSFDRALSEPREKSVKRSQILGVMLGFFQGAMYGAYTLTLWFGALLVKQGKAQFGDVVKIFLILVLSSFSVGQLAGLAPDTSLAATGIPAVLDIIHRGPLIGNDKMKVKKLKRSELLKLEFKMVTFAYPSRPEVIVLRNFNLKVKGGSTVALVGASGSGKSTVIWLIQRFYDPNQGQVMMGGLDLRDIDVEWLRRQTALVGQEPALFAGSIRENIAFGNPEASWAEIEVAAKEAYIHKFISSLPQGYETQVGESGVQLSGGQKQSQCLHWFSMMSHRDKAHNGEEISFGYRLLLSTSMCCRISHHSHFAKRASLISLFDISLRFYASTHSGKRGMASLVPGVLLKLLKTINSDVKVLGEHRSVLLQVISIVPALAGSELWPNQGFFIKVSDSSHSTFASLSNEDNELILNNKLQLGQFFYVEKMEAGTQVPVLVGVRPVPGRHPFVGDPKDLMQILDPSSEGNVETENIEGVLKETQSPRKKKIFIKEEKAGIASRYMQGVPTSMKVNGPDSNNGGNRGNGLENGSGQKVGSAKRKQKEIKGKVPAMIPTCDRPEALPTKQESAQCNIKETAIVPSKSSSSKSSSPKQEILDSNFVSSSKNKNYTSEAIPWSSLSRSLLKPSKGMLRRKHLASMVAVEAQREASSASILVRCLSMFANLCSSAASENPHPTLNKFFALQLLMDQRNAKTSLKDKSLESSNLPSHGKTDKSGRKTSLVPCKNNTTSKSAKPQIELSLSGKLEWANGDGLKEANELRQILIKETRSWFLNYLEKTLDSGFSSSGTQGKKDRVNKDIALTLSHLKNAKEWLDKLRSTLDSENEEMVENVERLKEKVCSCLMVQVGSAASALEKRA 1986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1218 1986 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 848 IPR027417 -
Lele39g1218 1986 Pfam ABC transporter 632 781 IPR003439 GO:0005524
Lele39g1218 1986 MobiDBLite consensus disorder prediction 1 65 - -
Lele39g1218 1986 Gene3D - 1251 1398 IPR027417 -
Lele39g1218 1986 Gene3D - 612 887 IPR027417 -
Lele39g1218 1986 MobiDBLite consensus disorder prediction 1823 1864 - -
Lele39g1218 1986 CDD ABC_6TM_Pgp_ABCB1_D2_like 920 1235 - -
Lele39g1218 1986 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1253 1493 IPR003439 GO:0005524
Lele39g1218 1986 ProSitePatterns ABC transporters family signature. 753 767 IPR017871 GO:0005524|GO:0016887
Lele39g1218 1986 CDD ABC_MTABC3_MDL1_MDL2 614 851 - -
Lele39g1218 1986 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 614 850 IPR003439 GO:0005524
Lele39g1218 1986 MobiDBLite consensus disorder prediction 1 49 - -
Lele39g1218 1986 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1252 1400 IPR027417 -
Lele39g1218 1986 SUPERFAMILY ABC transporter transmembrane region 919 1230 IPR036640 GO:0005524|GO:0016020
Lele39g1218 1986 SUPERFAMILY ABC transporter transmembrane region 274 599 IPR036640 GO:0005524|GO:0016020
Lele39g1218 1986 MobiDBLite consensus disorder prediction 1636 1698 - -
Lele39g1218 1986 PANTHER ABC TRANSPORTER B FAMILY 260 850 - -
Lele39g1218 1986 MobiDBLite consensus disorder prediction 883 910 - -
Lele39g1218 1986 MobiDBLite consensus disorder prediction 1848 1864 - -
Lele39g1218 1986 Pfam ABC transporter 1271 1403 IPR003439 GO:0005524
Lele39g1218 1986 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 933 1217 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele39g1218 1986 MobiDBLite consensus disorder prediction 893 910 - -
Lele39g1218 1986 Gene3D ABC transporter type 1, transmembrane domain 336 1094 IPR036640 GO:0005524|GO:0016020
Lele39g1218 1986 Coils Coil 890 910 - -
Lele39g1218 1986 FunFam ABC transporter B family member 1 604 852 - -
Lele39g1218 1986 Coils Coil 1935 1966 - -
Lele39g1218 1986 FunFam ATP-binding cassette transporter, subfamily B, member 2, group MDR/PGP protein PpABCB2 1104 1244 - -
Lele39g1218 1986 MobiDBLite consensus disorder prediction 1704 1723 - -
Lele39g1218 1986 MobiDBLite consensus disorder prediction 1636 1665 - -
Lele39g1218 1986 CDD ABC_6TM_Pgp_ABCB1_D1_like 288 587 - -
Lele39g1218 1986 Gene3D ABC transporter type 1, transmembrane domain 1103 1249 IPR036640 GO:0005524|GO:0016020
Lele39g1218 1986 SMART AAA_5 641 842 IPR003593 -
Lele39g1218 1986 SMART AAA_5 1280 1462 IPR003593 -
Lele39g1218 1986 Pfam ABC transporter transmembrane region 931 1199 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele39g1218 1986 Pfam ABC transporter transmembrane region 287 563 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele39g1218 1986 Pfam Plant protein of unknown function (DUF936) 1472 1624 IPR010341 -
Lele39g1218 1986 Pfam Plant protein of unknown function (DUF936) 1693 1821 IPR010341 -
Lele39g1218 1986 Pfam Plant protein of unknown function (DUF936) 1823 1982 IPR010341 -
Lele39g1218 1986 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 288 579 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1218 Lele-ChrLele39 20837304 20848450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1218 279 850 Calmodulin-binding Proteins AT2G36910 36.632 3.55e-105 367