Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1209 ATGTCGACCTTTTCTGATGCCGCGGCGGATAGCCGGAGGGCCGGCAAGCTGGCGGAGAGGTCCAATTTCTCCCAGACTTACAATCTCTTAAGCCAATTCTTGAAGGAGAAGCGTAGTTCTGGTGCTCTGAGCCTTGGAATGTGCGGGAAAATTGAACCCAGAGGAAATCCAACTTCTACGGTGGATTTGTTAACATCCCTGGAAAAATCTGGTGATACCTCGAAACTAAGTGATAAGACCTCGAAACTAAGTCCTTCAGTAATGGATTTTCTACCTCAGCTAGTAGAAAACCAGTCTATTATTAGGTCACACGCCAAGGCAGAGCCTAAAACTCCCCAAATGGCAATATTTTACTACGGGAAGGTGTTGGTATTTGACGATTTTCCGCCGGAGAAGGCGACGGAGATCATGGAGCTAGCCACCAAGTTAAGCTCTGATAATTCTGGGATCATCAAAAGCACCCCAAATGCTTCTGTAACTCTTGAAAATATCAACGAGGTTAAGGTGAATCAAACAAGCACATCCCAAGAAGGTTCTCGTCTAGGCTCTGTCGCTTCTGGTTCAGATATGAGGTACCCGAGGAGAGCTTCGCTTTTGAAATTTCTGGAGAAAAGAAAAGAAAGGGTCATTGCAAGAGGACCATATCATATGAACCCTGAGCATGAAGGAGGCAGATCTGGAGGCCACCCTGAAGATCAATCTTGCAAACCCTTTGACCTTAACTTGTAG 729 0.4595 MSTFSDAAADSRRAGKLAERSNFSQTYNLLSQFLKEKRSSGALSLGMCGKIEPRGNPTSTVDLLTSLEKSGDTSKLSDKTSKLSPSVMDFLPQLVENQSIIRSHAKAEPKTPQMAIFYYGKVLVFDDFPPEKATEIMELATKLSSDNSGIIKSTPNASVTLENINEVKVNQTSTSQEGSRLGSVASGSDMRYPRRASLLKFLEKRKERVIARGPYHMNPEHEGGRSGGHPEDQSCKPFDLNL 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1209 242 MobiDBLite consensus disorder prediction 210 242 - -
Lele39g1209 242 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 13 219 IPR040390 -
Lele39g1209 242 SMART tify_2 107 142 IPR010399 -
Lele39g1209 242 ProSiteProfiles Tify domain profile. 107 142 IPR010399 -
Lele39g1209 242 MobiDBLite consensus disorder prediction 210 229 - -
Lele39g1209 242 Pfam tify domain 108 140 IPR010399 -
Lele39g1209 242 Pfam Jas motif 194 215 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1209 Lele-ChrLele39 20777585 20778982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1209 19 226 Tify Gene Family AT1G19180 33.766 2.38e-23 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lele39g1209 tify 9.8e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1209 39 20777585 20778982 Lele39g1209 39 20777585 20778982 ECH
Lele37g0217 37 1686214 1687589 Lele39g1209 39 20777585 20778982 hybridization
Lele38g0218 38 1707192 1710672 Lele39g1209 39 20777585 20778982 hybridization