Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1202 ATGAAAGCTCTGCTCCTAAGTAAACCTGCTCCCCACTTCAATTTTTCTTCCAAACACACGCATTCTTCTTCACCTCTTCTCACTTTTCCCACACATTCTCTTCGCCTCCAACCAACCAACACCTCCTCATTCACCTTCCACGCCATTCAAAATCAAGGCCAGCAAATTTTCCAGGACACGCCTCCTCCCATCGACAAAGAAGATGAATCCTACGGCGAAGTTAAAGGTATTATCGGAAGCAGGGCCCTTGAAGGCGGCACTGGCATGGAGTATTTGATCGAATGGAAAGATGGCCATGACCCCTCATGGGTGCCCTCCGATTTCATCGCCAAAGATGTCGTGGCCGAGTACGAGACCCCGTGGTGGACCGCCGCCAAGAAAGCCGATGAATCCGCTCTCAAGCAGCTCATTGACGCCGACGACGGCAGGGACATCGACGCGGTCGATAGCGACGGCCGAACGGCACTCCTGTTCGTATCGGGTCTGGGTTCGGAGCCGTGCGTTAGGGCGCTGGCCGAAGCGGGCACAAATCTGGATCATCGAGATAATTCGGGGGGCCTGACGGCGCTTCACATGGCGGCCGGGTACGTGAGGCCCGGCGTGGCAAAGCTTCTGGTAGATCTTGGGGCGGACGTTGAGGCGGAAGACGACAGGGGACGGACGCCGATAGAGCTAGCTAAGGAAATCCTGAACGCAACGCCCAAAGGGAACCCGATGCAGTTCGGGAGGAGGATAGGGCTAGAGGGCGTGATAAGATCTTTGGAGGCGGCCATATACGAGTACGCAGAGGTGGAGGGGATATTGGAGAAGAGAGGGAAGGGAAAGAACTTGGAGTATTTGGTGAAATGGAAAGACGGAGGAGAGAACGAGTGGGTTAAGGCCAAGTTCGTCGGAGAGGATGTGGTGAGAGATTACGAAGCGGGACTGGAGTACGCGGTGGCGGAGCGAGTGACGGGAAGAAGAGACGGGGACGATGGGAAAGCAGAGTTTCTGGTAAAATGGGCCGATATGGATCAGCCCACATGGGAGCCCGAAGACAATGTGGATCCTCAGCTCATAGAGGAATATGAACAAGCCCAAAACATCAGCCCCAGCCCAAAATGA 1104 0.5507 MKALLLSKPAPHFNFSSKHTHSSSPLLTFPTHSLRLQPTNTSSFTFHAIQNQGQQIFQDTPPPIDKEDESYGEVKGIIGSRALEGGTGMEYLIEWKDGHDPSWVPSDFIAKDVVAEYETPWWTAAKKADESALKQLIDADDGRDIDAVDSDGRTALLFVSGLGSEPCVRALAEAGTNLDHRDNSGGLTALHMAAGYVRPGVAKLLVDLGADVEAEDDRGRTPIELAKEILNATPKGNPMQFGRRIGLEGVIRSLEAAIYEYAEVEGILEKRGKGKNLEYLVKWKDGGENEWVKAKFVGEDVVRDYEAGLEYAVAERVTGRRDGDDGKAEFLVKWADMDQPTWEPEDNVDPQLIEEYEQAQNISPSPK 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1202 367 ProSiteProfiles Ankyrin repeat profile. 151 183 IPR002110 GO:0005515
Lele39g1202 367 ProSiteProfiles Chromo and chromo shadow domain profile. 262 291 IPR000953 -
Lele39g1202 367 Pfam Ankyrin repeats (many copies) 171 226 IPR002110 GO:0005515
Lele39g1202 367 Gene3D - 116 257 IPR036770 -
Lele39g1202 367 SMART ANK_2a 185 214 IPR002110 GO:0005515
Lele39g1202 367 SMART ANK_2a 151 180 IPR002110 GO:0005515
Lele39g1202 367 SMART ANK_2a 116 147 IPR002110 GO:0005515
Lele39g1202 367 SUPERFAMILY Chromo domain-like 260 307 IPR016197 -
Lele39g1202 367 SUPERFAMILY Chromo domain-like 310 366 IPR016197 -
Lele39g1202 367 ProSiteProfiles Ankyrin repeat region circular profile. 185 217 - -
Lele39g1202 367 SMART chromo_7 311 361 IPR000953 -
Lele39g1202 367 SMART chromo_7 70 122 IPR000953 -
Lele39g1202 367 SMART chromo_7 260 310 IPR000953 -
Lele39g1202 367 SUPERFAMILY Chromo domain-like 67 121 IPR016197 -
Lele39g1202 367 CDD CD2_cpSRP43_like 260 307 - -
Lele39g1202 367 PANTHER MYOTROPHIN 73 227 - -
Lele39g1202 367 CDD CD3_cpSRP43_like 309 357 - -
Lele39g1202 367 ProSiteProfiles Ankyrin repeat profile. 185 217 IPR002110 GO:0005515
Lele39g1202 367 ProSiteProfiles Chromo and chromo shadow domain profile. 312 367 IPR000953 -
Lele39g1202 367 Pfam Chromo (CHRromatin Organisation MOdifier) domain 314 358 IPR023780 -
Lele39g1202 367 Gene3D - 68 115 - -
Lele39g1202 367 Gene3D - 258 307 - -
Lele39g1202 367 SUPERFAMILY Ankyrin repeat 116 228 IPR036770 -
Lele39g1202 367 Gene3D - 308 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1202 Lele-ChrLele39 20727947 20729050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1202 139 226 CAMTA Transcription Factor Family AT5G09410 35.106 1.26e-06 48.5