Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1193 ATGCCCTGCAAAATCTTTCTACTTGGCTGTTTCAAGACCAAGAATAATAATAAGCCATCCTCTGATCCATCTCTAGTCTCCAAGAAGACACCTGCAAGGAGACTTTCCCTCTCTGATTTGAGCAATGTTTCTTCAATCTCTATAATGATTGATTTGTCCAACTCTGTTCTCGGATCAACTCTTCATGTTTTCACCTTCAAGGAGCTTCAAGAGATCACTAATAACTTCAGCAGAAGCAGTGTTCTTGGAGAAGGTGGATTTGGCAAAGTGTATAAAGGCTTCATTGATGACAAGCTTAGGCCTGGTTTATTAAAACCTCAACTTGTGGCAGTTAAGGTTTTAGACTTAGATGGGAAACAAGGCCATAGGGAGTGGTTGGCAGAAGTAATAATTCTGGGGCAGTTGAAGCATCCCAATCTGGTGAACCTAATTGGGTATTGCTGTAAAGATGAGAACAGGCTACTGGTTTACGAATACATGGAAAGGGGCAATTTAGATGACAAGCTTTTTAAAGGCTCTTTAGCAGCGTTGCCATGGTTAACAAGAATCAAAATAGCAATTGGGGCAGCAAAAGGTCTTGGCTTTCTTCACGAAGAAGAAAAACCAGTCATATACAGAGATGTTAAAGCCTCAAACATACTATTAGATGCAGATTACAATGCTAAACTCTCTGATTTTGGGCTAGCAATAGACGGTCCAGATGAAGATCAGAGCCATATCACAACTCGAGTTATGGGCACCCACGGCTATGCTGCTCCTGAGTATATCATGACAGGGCATTTGACAACAATGAGCGATGTATACAGCTATGGGGTGGTTCTCTTAGAGCTACTTACAGGAAAGAGATCAGTGGACAAGAAACGACCTTCGAGAGAGCAGGATTTAGTAGAATGGGCCAGACCACTTCTGAAAGATACCATGAAACTCGAGAGAATAATGGATCCAAGACTTGAGGGTCAATACTCCATTGAAGGAGCTAGAAAGGTGGCTGCTTTGGTTCACCAATGTCTGAGTCATCAGGCCAAGACTCGGCCATCCATGAGAACCGTGGTCAAGTCTTTAGAGTCTATCATGAACCTCACCGACGTTCCACTGAGCCACTTTGTTTATGTGGTTCATAATGAGGGTAAAATGGACGGTTGGGTTCGAAGTAAAGTTGAAACAGGAGGAAAGAACGAGAACAGAGAGAAGAAGGTGGAGACGACGAAGGAGAAGGGCCGGCCGACGAATCGGAAAAATCGGAGACGTAAACGACAGATTAAACCCCTCCAGTCTCGTGCCGTTTATACTGATACGACATTGTATAAAACTCTTGGTACTAGTTTGTACAATAATCAAATTAGCGTAATAACTTAA 1356 0.427 MPCKIFLLGCFKTKNNNKPSSDPSLVSKKTPARRLSLSDLSNVSSISIMIDLSNSVLGSTLHVFTFKELQEITNNFSRSSVLGEGGFGKVYKGFIDDKLRPGLLKPQLVAVKVLDLDGKQGHREWLAEVIILGQLKHPNLVNLIGYCCKDENRLLVYEYMERGNLDDKLFKGSLAALPWLTRIKIAIGAAKGLGFLHEEEKPVIYRDVKASNILLDADYNAKLSDFGLAIDGPDEDQSHITTRVMGTHGYAAPEYIMTGHLTTMSDVYSYGVVLLELLTGKRSVDKKRPSREQDLVEWARPLLKDTMKLERIMDPRLEGQYSIEGARKVAALVHQCLSHQAKTRPSMRTVVKSLESIMNLTDVPLSHFVYVVHNEGKMDGWVRSKVETGGKNENREKKVETTKEKGRPTNRKNRRRKRQIKPLQSRAVYTDTTLYKTLGTSLYNNQISVIT 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1193 451 Pfam Protein tyrosine and serine/threonine kinase 79 354 IPR001245 GO:0004672|GO:0006468
Lele39g1193 451 SMART serkin_6 76 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g1193 451 CDD STKc_IRAK 82 357 - -
Lele39g1193 451 MobiDBLite consensus disorder prediction 389 423 - -
Lele39g1193 451 MobiDBLite consensus disorder prediction 408 422 - -
Lele39g1193 451 FunFam Serine/threonine-protein kinase BIK1 43 159 - -
Lele39g1193 451 Gene3D Transferase(Phosphotransferase) domain 1 160 368 - -
Lele39g1193 451 ProSitePatterns Protein kinases ATP-binding region signature. 82 112 IPR017441 GO:0005524
Lele39g1193 451 FunFam Serine/threonine-protein kinase PBS1 160 369 - -
Lele39g1193 451 PANTHER OS01G0588500 PROTEIN-RELATED 30 357 - -
Lele39g1193 451 ProSiteProfiles Protein kinase domain profile. 76 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g1193 451 MobiDBLite consensus disorder prediction 389 407 - -
Lele39g1193 451 Gene3D Phosphorylase Kinase; domain 1 48 159 - -
Lele39g1193 451 SUPERFAMILY Protein kinase-like (PK-like) 57 355 IPR011009 -
Lele39g1193 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1193 Lele-ChrLele39 20644029 20645767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1193 51 414 Glycoside Hydrolase AT3G07070 45.504 9.01e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele39g1193 PK_Tyr_Ser-Thr 7.2e-48 CL0016