Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1191 ATGATAAGTAGTGAAACAAGTAGTGTAAGAAATAGGGCTCCTTTCACAGCAATTCAATGGCAAGAACTTGAACAACAAGCTCTTATCTTTAAATACCTGGTCTCAGGGAGCCCCATCCCACCTGATCTCATTTACTCTGTCAGAAGAAGCCTAGACTCTTCTTCAGTGTCTTCTTCTTCATCTTCAAGGCTCTTCCCCTTCCATCCAATTGGATGGGGATGCCTAGAAATGGGATATGGTAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAAAAATGGAGATGCTCAAAAGAAGCCTATCTGGACTCAAAATACTGTGAGAGGCACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAATTTCTTCAACAACTGGCATTTCAACAAACACTTCACAGCCAATCTCTTCACCATACACTAGTAACAGAGGCCTTAGCATGAGCAATCCCAATCCACCCTCAACAACTTCTTTCCCTTTCTCTCTATTGCCCTCTGATTCCCAACCTTATTCCCATATCTACCAAAATTCTTCTCTTAATCCCTTGTTCTACACCCATTCAACCTCATGTAGACCTCCTGATTCTGATTTTCCTTCCCAAAAAAGCAATACCCACCAGCTATTTTCAGACTCTGAATCTTATTCTAGGGATGAGAACTATAGTAGTAAGTTTGAGTTTATTATTTGCAGCAGGCATATTCATGGAATGAGGGGAGGTGTGGATGAGAGAGCTTTCTTCCCAGAAGCCTCAGGGAGTGTTAGGAGCTTTCCTGAATCATATCAACAATTACCAATGAGCTCCCAGTTCCAGAACATGAATGATAATCCAACTCCAAGACAACAAGGAGAGCAGCATTGCTTTGTTCTGGAAAGAGACTTCAAATCAGCAGGACAAATAAAACATGAGAATGAAACTGATATGAGCCAGAGATCATCCCTTCATCATTTCTTTGGTGAATGGCCTCCAAAGAACACAGATTCCTGGCTTGATCTTGCTTCAAATTCCAGAGTCCCCTCTGGTAATGTTCTATTATCCATAGCTTCCTCTTCATTGTTTATCTATATAATTCATTTAATTTATTAG 1104 0.413 MISSETSSVRNRAPFTAIQWQELEQQALIFKYLVSGSPIPPDLIYSVRRSLDSSSVSSSSSSRLFPFHPIGWGCLEMGYGRKVDPEPGRCRRTDGKKWRCSKEAYLDSKYCERHMHRGKNRSRKPVEISSTTGISTNTSQPISSPYTSNRGLSMSNPNPPSTTSFPFSLLPSDSQPYSHIYQNSSLNPLFYTHSTSCRPPDSDFPSQKSNTHQLFSDSESYSRDENYSSKFEFIICSRHIHGMRGGVDERAFFPEASGSVRSFPESYQQLPMSSQFQNMNDNPTPRQQGEQHCFVLERDFKSAGQIKHENETDMSQRSSLHHFFGEWPPKNTDSWLDLASNSRVPSGNVLLSIASSSLFIYIIHLIY 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1191 367 MobiDBLite consensus disorder prediction 197 221 - -
Lele39g1191 367 ProSiteProfiles WRC domain profile. 84 128 IPR014977 -
Lele39g1191 367 MobiDBLite consensus disorder prediction 125 168 - -
Lele39g1191 367 Pfam WRC 85 127 IPR014977 -
Lele39g1191 367 SMART QLQ_2 13 49 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele39g1191 367 ProSiteProfiles QLQ domain profile. 14 49 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele39g1191 367 Pfam QLQ 14 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele39g1191 367 PANTHER GROWTH-REGULATING FACTOR 5 13 342 IPR031137 GO:0005634|GO:0006351|GO:0032502
Lele39g1191 367 MobiDBLite consensus disorder prediction 116 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1191 Lele-ChrLele39 20614944 20616198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1191 1 281 GRF Transcription Factor Family AT3G13960 42.667 1.03e-59 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lele39g1191 WRC 4.2e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1191 39 20614944 20616198 Lele39g1191 39 20614944 20616198 ECH
Lele37g0234 37 1821249 1822603 Lele39g1191 39 20614944 20616198 hybridization
Lele38g0234 38 1841431 1843016 Lele39g1191 39 20614944 20616198 hybridization