Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1187 ATGGCATCTGAGACTGATAATTGTATTAAGAGGAAAGTGCAGAAAGTTGACAGGGCCATGACAAATGTGCCTCAAGGTAAAGCAGCATGGACACCAGAAGAAGATAAGAAACTAGCTGAAGTTATTGCAGTTCATGGGGCAAAAAGGTGGAAGTCCATTGCATCTAAAGCAGGTCTTAATCGGAGTGGTAAGAGTTGCAGGTTGAGATGGTTGAACTATCTCAGACCCAACATCAAGAGGGGGAACATATCAGATCAAGAAGAGGATTTGATTCTTCGGCTTCATAAACTCCTTGGAAACAGGTGGTCTTTAATCGCTGGTAGACTACCAGGGAGAACAGATAATGAGATAAAGAACTATTGGAATTCTCATTTGAGCACGAAGATAAAGCAGATGGAGAAGCGCTCAAGTGAGAGTTCAACCAGAGAAGAGAATCAAGAGGTGGTGGTAGAACAACACAAGATTCCCCAAGAAGCTGAGGTAATATGCAGAGAAGAGATTTCCACTGAGGAAACTGAAGAGTCATCATCAAAACCCAGTTTTGAGGTGAATGGGTTCTTTGATTTTTCTGTACAGGAAGGTCCATTGAATCTGGAGTGGGTTAGCCAGTTCCTTGAACTTGATGAAACAACTCTTGGAATCTTCTCATAA 651 0.4209 MASETDNCIKRKVQKVDRAMTNVPQGKAAWTPEEDKKLAEVIAVHGAKRWKSIASKAGLNRSGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSTKIKQMEKRSSESSTREENQEVVVEQHKIPQEAEVICREEISTEETEESSSKPSFEVNGFFDFSVQEGPLNLEWVSQFLELDETTLGIFS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1187 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Lele39g1187 216 FunFam Myb transcription factor 27 79 - -
Lele39g1187 216 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Lele39g1187 216 Gene3D - 83 155 - -
Lele39g1187 216 MobiDBLite consensus disorder prediction 131 151 - -
Lele39g1187 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 74 IPR017930 -
Lele39g1187 216 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Lele39g1187 216 CDD SANT 84 125 IPR001005 -
Lele39g1187 216 Pfam Myb-like DNA-binding domain 29 74 IPR001005 -
Lele39g1187 216 Pfam Myb-like DNA-binding domain 80 125 IPR001005 -
Lele39g1187 216 SUPERFAMILY Homeodomain-like 27 121 IPR009057 -
Lele39g1187 216 Gene3D - 28 79 - -
Lele39g1187 216 CDD SANT 29 74 IPR001005 -
Lele39g1187 216 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 24 170 - -
Lele39g1187 216 SMART sant 26 76 IPR001005 -
Lele39g1187 216 SMART sant 79 127 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1187 Lele-ChrLele39 20588042 20589019 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1187 27 129 MYB Transcription Factor Family AT5G40330 67.961 2.31e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele39g1187 Myb_DNA-binding 8.9e-19 CL0123