LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele39g1186	ATGGCTTGTAGGAGTGATGGTAATAAGAGCGAAGAGAAGTCAAATGAAAGCATGAAGGAAGTAGCTGTGAGCAAGGGAACTTGGACGGCAGAGGAAGATAGGAAACTAGCTGAGGTTATTGCAGTTCATGGGGCCAAGAAGTGGAAGTCCATAGCTGCCAAAGCAGGACTTAACCGTGGTGGTAAGAGTTGCAGGCTGAGATGGTTGAACTATCTTAGACCCAACATCAAGAGAGGAAACATATCAGAACAAGAAGAGGATTTGATACTTCGACTTCATAAACTCCTTGGAAACAGATGGTCTTTAATTGCGGGAAGGCTGCCGGGAAGAACAGACAATGAGATAAAGAACTACTGGAATTCTCACTTGTGCAAGAAGATAAAAAACCAGAGGGATGAGCAGCAATCAAGTGGTGGCAGTTCAACAAGAAAAGAGAAACAAAGAGTTGTGTTGGAGGAAGCAGTTCCTGAAGAGAATTCTACAGTGCGAGGGGATGAAGAAGAAACATCAATTAATAAAGAACCCATCAATTTTGATAATGTGGGACGAGGCTTCTTTGACTTGTCCAATAATAATGAAGAACGGGAATTGAATCTGGAGTGGGTTAATCAATTCCTTGAACTAGATGAGGCCACTCTTGGACTCTTCTCATAA	654	0.4251	MACRSDGNKSEEKSNESMKEVAVSKGTWTAEEDRKLAEVIAVHGAKKWKSIAAKAGLNRGGKSCRLRWLNYLRPNIKRGNISEQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKIKNQRDEQQSSGGSSTRKEKQRVVLEEAVPEENSTVRGDEEETSINKEPINFDNVGRGFFDLSNNNEERELNLEWVNQFLELDEATLGLFS	217

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele39g1186	217	Pfam	Myb-like DNA-binding domain	25	72	IPR001005	-
	Lele39g1186	217	Pfam	Myb-like DNA-binding domain	78	123	IPR001005	-
	Lele39g1186	217	FunFam	MYB-related transcription factor	24	77	-	-
	Lele39g1186	217	CDD	SANT	27	72	IPR001005	-
	Lele39g1186	217	FunFam	Transcription factor TT2	81	151	-	-
	Lele39g1186	217	MobiDBLite	consensus disorder prediction	129	150	-	-
	Lele39g1186	217	ProSiteProfiles	Myb-like domain profile.	20	72	IPR001005	-
	Lele39g1186	217	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	18	174	-	-
	Lele39g1186	217	MobiDBLite	consensus disorder prediction	1	20	-	-
	Lele39g1186	217	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	20	72	IPR017930	-
	Lele39g1186	217	Gene3D	-	82	153	-	-
	Lele39g1186	217	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	73	127	IPR017930	-
	Lele39g1186	217	ProSiteProfiles	Myb-like domain profile.	73	123	IPR001005	-
	Lele39g1186	217	MobiDBLite	consensus disorder prediction	1	19	-	-
	Lele39g1186	217	CDD	SANT	82	123	IPR001005	-
	Lele39g1186	217	SUPERFAMILY	Homeodomain-like	24	119	IPR009057	-
	Lele39g1186	217	Gene3D	-	25	77	-	-
	Lele39g1186	217	SMART	sant	77	125	IPR001005	-
	Lele39g1186	217	SMART	sant	24	74	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele39g1186	Lele-ChrLele39	20577852	20578761	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele39g1186	23	177	MYB Transcription Factor Family	AT5G52600	53.548	2.34e-50	160

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele39g1186		Myb_DNA-binding	1e-16	CL0123