Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1185 ATGGGAAGAAGGAACCCTTGCTGTTCGAAGGCAGGTTTGAATAGAGGGGCATGGACAGCTTCTGAAGACAAGATTCTCATTGAATACATCAAGCATCATGGTGAAGGAAAATGGAGACATCTTCCCAAAAGAGCAGGTCTGAAGAGATGTGGAAAGAGTTGTAGGCTGAGATGGTTAAATTATCTGAGACCTGATATCAAAAGAGGAAATATTACTCATGACGAAGTGGAACTCATTATCAGGCTCCATAATCTTCTTGGAAATAAGTAA 270 0.4074 MGRRNPCCSKAGLNRGAWTASEDKILIEYIKHHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNITHDEVELIIRLHNLLGNK 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1185 89 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Lele39g1185 89 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 89 - -
Lele39g1185 89 CDD SANT 17 62 IPR001005 -
Lele39g1185 89 SUPERFAMILY Homeodomain-like 16 89 IPR009057 -
Lele39g1185 89 SMART sant 14 64 IPR001005 -
Lele39g1185 89 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Lele39g1185 89 FunFam Myb transcription factor 12 68 - -
Lele39g1185 89 Gene3D - 15 67 - -
Lele39g1185 89 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1185 Lele-ChrLele39 20571344 20571699 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1185 4 89 MYB Transcription Factor Family AT2G16720 72.093 2.42e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele39g1185 Myb_DNA-binding 2.8e-16 CL0123