Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1184 ATGGTTGTCCTAAGAGGAAAAGTGAAGGCAGTTGAAACTCTGAGCAAAGCTCCTTGGACACCTGAAGAAGATAGGAAACTTTCTGAGGTTACTGAACTTTATGGGGAAAAACGGTTGAAGTCCATTGCAGTCAAAGCAGGTCTCAATCGGAGCGGCAAAAGTTGTAGGTTAAGGTGGATGATCTATCTCAGACCTAAATATCAAGAGAGGAAACATTTCAGAAACATTTCAGACGAAGAGGATGTGATCATTCGCCTTCACAAACTTCTTGGAAATAGCAAGCTGAAGAGTCATCATCAAAAACCCAAATTTGATATCGATGGCGTCTTTGATTTCTCAGAAGGTACCTTGAATCTGGAGAGGGTTAGCCGATTCCTCGAGCTCGATGAAACAACGTTGGGACTCTTCTCACAATACTAA 420 0.4214 MVVLRGKVKAVETLSKAPWTPEEDRKLSEVTELYGEKRLKSIAVKAGLNRSGKSCRLRWMIYLRPKYQERKHFRNISDEEDVIIRLHKLLGNSKLKSHHQKPKFDIDGVFDFSEGTLNLERVSRFLELDETTLGLFSQY 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1184 139 Pfam Myb-like DNA-binding domain 18 63 IPR001005 -
Lele39g1184 139 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Lele39g1184 139 SUPERFAMILY Homeodomain-like 15 96 IPR009057 -
Lele39g1184 139 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 67 IPR017930 -
Lele39g1184 139 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 13 98 - -
Lele39g1184 139 CDD SANT 18 63 IPR001005 -
Lele39g1184 139 Gene3D - 16 67 - -
Lele39g1184 139 SMART sant 15 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1184 Lele-ChrLele39 20565919 20567138 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1184 14 92 MYB Transcription Factor Family AT5G15310 54.430 7.52e-20 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele39g1184 Myb_DNA-binding 2.2e-12 CL0123