Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1182 ATGGGAAGGAGCCCTTGCTGTGCAAAGGAAGGTTTGAATAGAGGAGCATGGACTGCTATTGAAGATAAGATTCTCATTGACTACATTAAGATTCACGGCGAAGGAAAATGGAGAAATCTTCCCAAAAGAGCAGGTCTGAAGAGATGTGGAAAGAGTTGTAGGCTGAGATGGTTAAATTATCTGAGACCTGACATCAAAAGAGGAAATATTACTCATGACGAAGAGGATCTCATCATCAGGCTTCACAAACTTCTCGGAAACAGGTGGTCTTTGATAGCTGGACGACTACCAGGACGAACAGACAATGAAATAAAGAATTATTGGAACTCTAACATCGGAAAAAAGCTTCAAAATGGAAACTCAAAAACAAAGTCGTCTCCTACATCAAGCGGCTCGCCAAGCCAAGCCAGACAGGAAAAGGCATCCGACTCAGACTCGGACCCACAAGCCCCACAAAAACCGGCCGGTCCATGCCACCTGGTTCGGACCAAAGCAACAAGGTGCACCAAAGTGATAGTGAGCAGAGAATTCCAACCCTTAATGGCGGCCGTATCATCTTTGACCACTCGTGATTACTATGAGGACATGAACGTTAGGTGTGATGGTCATGAGAAAATAATGAAGGCACCATTACCACCTTTTGTGGATTCTGATGAGGGAAATAATGATGATGATGATGATGATAATAATACAAACACTGGGTTAGATTTCATGGCTGATTTTGAGATGGACGAGGGGTTCTTTTCGGATCTTCTGAATATGGATATATCCGAACCGTCTTGTTTTGAGAATAATAAAGTTACTGTGGAACAAGACATGAGCAACGCCAGCACTACTAGCGAACAAGATTGCCATCAGAATTTGTCTTCTTCATCACCGTTAGTATCTAATGACGACACCCACTTGAATAATAATTTTTCTGAGGATTCCTTGCCTGAGTCTGAGGATTTCCAATCAATGTCAGCTTTAATGGAGAATGAATTTGATTGGCTTTGA 996 0.4237 MGRSPCCAKEGLNRGAWTAIEDKILIDYIKIHGEGKWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNITHDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSNIGKKLQNGNSKTKSSPTSSGSPSQARQEKASDSDSDPQAPQKPAGPCHLVRTKATRCTKVIVSREFQPLMAAVSSLTTRDYYEDMNVRCDGHEKIMKAPLPPFVDSDEGNNDDDDDDNNTNTGLDFMADFEMDEGFFSDLLNMDISEPSCFENNKVTVEQDMSNASTTSEQDCHQNLSSSSPLVSNDDTHLNNNFSEDSLPESEDFQSMSALMENEFDWL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1182 331 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lele39g1182 331 SMART sant 13 63 IPR001005 -
Lele39g1182 331 SMART sant 66 114 IPR001005 -
Lele39g1182 331 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lele39g1182 331 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele39g1182 331 MobiDBLite consensus disorder prediction 209 231 - -
Lele39g1182 331 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele39g1182 331 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 204 - -
Lele39g1182 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele39g1182 331 MobiDBLite consensus disorder prediction 115 139 - -
Lele39g1182 331 CDD SANT 71 112 IPR001005 -
Lele39g1182 331 FunFam Transcription factor TT2 70 142 - -
Lele39g1182 331 MobiDBLite consensus disorder prediction 115 161 - -
Lele39g1182 331 Gene3D - 70 144 - -
Lele39g1182 331 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele39g1182 331 MobiDBLite consensus disorder prediction 274 316 - -
Lele39g1182 331 Gene3D - 14 66 - -
Lele39g1182 331 CDD SANT 16 61 IPR001005 -
Lele39g1182 331 FunFam MYB-related transcription factor 13 66 - -
Lele39g1182 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1182 Lele-ChrLele39 20500181 20501992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1182 1 116 MYB Transcription Factor Family AT2G16720 75.000 1.44e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele39g1182 Myb_DNA-binding 6.5e-14 CL0123