Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1178 ATGGAAAAGAGTCTCAGTTTTCTTCAGGGTTCACAGAAGCTTATCAATATGGCGACCCAAATGAGCAAAAAGCGAAAGTTTGTAGCTGATGGGGTTTTCTTTGCGGAGCTGAATGAAGTTTTGACTAGGGAGCTTGCAGAGGATGGGTACTCTGGTGTTGAAGTTAGGGTTACCCCCATGAGGACTGAGATCATCATTAGGGCGACTCGCACTCAGAACGTTCTCGGTGAGAAGGGAAGAAGAATCAGGGAACTGACTTCTATTGTTCAGAAGCGTTTCAAGTTTCCCGAGAACAGTGTTGAGCTATATGCTGAGAAAGTCAACAACAGAGGGCTCTGTGCTATTGCACAGGCAGAGTCTCTGCGATACAAGCTTCTCGGAGGGCTTGCTGTCAGAAGGGCTTGCTATGGTGTCCTTAGGTTTGTCATGGAAAGTGGCGCCAAAGGTTGCGAGGTTATTGTTAGTGGCAAGCTCAGGGCTCAGCGTGCCAAATCTATGAAATTCAAGGATGGATATATGATATCATCCGGGCAGCCCGTCAAAGAATATATCGACTCTGCTGTGAGGCACGTGCTTTTGAGACAGGGTGTTCTTGGTATCAAGGTGAAAATCATGCTTGATTGGGATCCTAAGGGCAAGCAAGGACCAACCAAACCTATTCCTGATGTTGTCACGATCCATCCACCAAAGGAGGAAGAAGATTATATTAACAGGCCCTTGCAACAGCCCTCAGTCCCCACCAACATAGAGATTGCAGCTGTCTAG 765 0.4719 MEKSLSFLQGSQKLINMATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSIVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTKPIPDVVTIHPPKEEEDYINRPLQQPSVPTNIEIAAV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1178 254 CDD 40S_S3_KH 31 111 - -
Lele39g1178 254 Pfam KH domain 36 109 IPR004044 GO:0003723
Lele39g1178 254 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 22 218 - -
Lele39g1178 254 Gene3D - 109 235 IPR036419 -
Lele39g1178 254 FunFam 40S ribosomal protein S3 109 244 - -
Lele39g1178 254 TIGRFAM uS3_euk_arch: ribosomal protein uS3 24 226 IPR005703 GO:0003735|GO:0006412|GO:0015935
Lele39g1178 254 ProSitePatterns Ribosomal protein S3 signature. 163 199 IPR018280 -
Lele39g1178 254 ProSiteProfiles Type-2 KH domain profile. 37 108 IPR004044 GO:0003723
Lele39g1178 254 SUPERFAMILY Ribosomal protein S3 C-terminal domain 109 207 IPR036419 -
Lele39g1178 254 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 26 115 IPR009019 GO:0003723
Lele39g1178 254 FunFam 40S ribosomal protein S3 17 108 - -
Lele39g1178 254 Gene3D - 14 107 IPR015946 -
Lele39g1178 254 Pfam Ribosomal protein S3, C-terminal domain 122 204 IPR001351 GO:0003735|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1178 Lele-ChrLele39 20455250 20457324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1178 17 236 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 91.364 3.30e-151 419