Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1173 ATGTTGACCTGCATTGCTTGTTCCAAGCAGCTTAATGACAAGAGATCTCTTCCCCTACAAGATGAGCAAGAAGAAGCTGCGGATACTCCCAGCACCAAGCAGGCCATTAAGGCCCTCACTGCACAGATCAAGGACATGGCAGTGAAGGCTTCTGGGGCGTATAAAAATTGCAAGCCTTGTTCAGGATCTTCGAATGGTAAGAGGAATCAGAGCTATGCTGATTCTGATATGGCTTCAGAATCAGCGAGATTTCACTGGGCGTACAAAAGGGCCGGGAGCTCAAACTCAACCCCAAGGCTTTGGGGAAAGGAGATGGAGGCGAGACTGAAAGGACTCTCTAGCGGGGAAGGAACTCCGGCGTCGGTGAGTGGCCGGACTGAGTCGGTGGTGTTCATGGAGGAGGATGAGCCCAAGGAATGGGTTGCTCAAGTAGAGCCTGGTGTACTTATCACTTTTGTTTCATTGCCTCAAGGTGGGAATGACCTGAAACGAATACGGTTCAGGTTCAATGAACAAGTTGGTCCACTGCCAACCCCGCCGAGATCCGATGATGAGAGCTTGAAGATTGAATCTGTTAGGGACAGCCCTGTCACGCCTCCTCTTAACAAAGAGCGTCCACCTCATCATCTTCTTCACCGTCAAATGGGGATGGGATACTCATCATCAGATTCACTGGATCATCACCACACGATGCAACAACAACGCCCATGCTATGAAACAAGCGGCTTAGCTTCGACACCTAAACTTTCTAGCATCAGCGGGGCAAAGACGGAAACATCGTCCTTAGACGGCTCCGTGAGGACTAGTTCATCAAGAGAGGGAGATCAGTCTGGCGAGCTTTCATTCAGCAATGCCAGTGATATGGAGACTGAATGGGTTGAACAGGATGAGCCAGGAGTATACATCACCATCAGGGCATTGCTAGGGGGAACCCGCGAACTCAGGCGAGTCCGGTTCAGCTTTCTATGTTATTTTGGTGCAGCCGAGAAAGGTTCGGAGAAATGCACGCGAGGTTGTGGTGGGAGGAGAACCGGGCGAGGATACAGGAGCAATATTTGTGAGACAAAACAATTTGAGGAGGCTCGCAGGATTATGAGGAAGTACAGCAAGAAAAGAAAGGAAATATATAGATGTTGGGGATGGATAGAGGCGTTTTGTGTATTCTTAGGTCCTGTTGCCTTTTTTTTTCCTCTTTATTCTTCAGTTGATAAAAACATTGGCAAGTGA 1227 0.489 MLTCIACSKQLNDKRSLPLQDEQEEAADTPSTKQAIKALTAQIKDMAVKASGAYKNCKPCSGSSNGKRNQSYADSDMASESARFHWAYKRAGSSNSTPRLWGKEMEARLKGLSSGEGTPASVSGRTESVVFMEEDEPKEWVAQVEPGVLITFVSLPQGGNDLKRIRFRFNEQVGPLPTPPRSDDESLKIESVRDSPVTPPLNKERPPHHLLHRQMGMGYSSSDSLDHHHTMQQQRPCYETSGLASTPKLSSISGAKTETSSLDGSVRTSSSREGDQSGELSFSNASDMETEWVEQDEPGVYITIRALLGGTRELRRVRFSFLCYFGAAEKGSEKCTRGCGGRRTGRGYRSNICETKQFEEARRIMRKYSKKRKEIYRCWGWIEAFCVFLGPVAFFFPLYSSVDKNIGK 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1173 408 MobiDBLite consensus disorder prediction 234 289 - -
Lele39g1173 408 MobiDBLite consensus disorder prediction 173 290 - -
Lele39g1173 408 Pfam Transcription factor BRX N-terminal domain 24 60 IPR027988 -
Lele39g1173 408 ProSiteProfiles BRX domain profile. 290 343 IPR013591 -
Lele39g1173 408 ProSiteProfiles BRX domain profile. 138 202 IPR013591 -
Lele39g1173 408 Pfam Transcription factor regulating root and shoot growth via Pin3 138 168 IPR013591 -
Lele39g1173 408 Pfam Transcription factor regulating root and shoot growth via Pin3 289 320 IPR013591 -
Lele39g1173 408 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 168 IPR044532 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1173 Lele-ChrLele39 20409877 20413883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1173 1 320 Major Intrinsic Protein MIP AT1G31880 39.617 3.37e-57 189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1173 39 20409877 20413883 Lele39g1173 39 20409877 20413883 ECH
Lele37g0251 37 1995231 1998335 Lele39g1173 39 20409877 20413883 hybridization
Lele38g0251 38 1991450 1994474 Lele39g1173 39 20409877 20413883 hybridization