Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1166 ATGGTGGCATGCTTACGGTTATGCTTGGCTATGAATGGTAGCTGCCAATCATGGCTGATAATAAACATGAATTTGCAACAAGTTGGGAAGCCCAAATCTTTTAATGGACATGGCCGCCGAAAATCTGAAAGAGAAGGAGCATTTAGATCAGAGAATAAGATCCAGTCAGGAAAATCAAATGCCAGCAGATTAGCAAGTACGGTGACTGGAACTAAAGGTGATAATCATGAGAGTCCTTCACGTGATCGATTATTGTACATAGCAACTTGCCTCATTGGGCAACAGGTGGAAGTCCATGTGAAAAGTGGATCTATATACTCTGGAATTTTCCATGCAGCAAATGCTGACAAAGATTTTGGAATCATTTTGAAAATGGCTCGCTTGATGAAGGATAGTTCTGTTCGAGGGAAGAGGTCTGGTGTAGAATTTGTGAGCCAAGCTCCTTCAAAGATATTAATTATATCTGGCAAAGATCTTGTACAAATCATGGCAAAGGATGTTGCTGTTACTCAGGATGAACTTTGTGGTGAGGCTCACCATGAAATGCATCAGGAGATTATGGTTGATTCAGCAATATCTCAATCTCTTCACGTCGAGATGGAGAGAGAACTATTACCCTGGGTACCTGATGGAGATGATTCACAATGCCCTGAACTGGAAAATATATTTGATGGCCCTTGGAATAGAGGATGGGATCAATTTGAAAGAAATGAAACATTGTTTGGTGTAAAAAGCACATTCAACGAGGAATTATATACAACAAGGCTTGAAAAAGGGCCTCATATGAGAGAGTTGGAAAAACAAGCTTTAAGAATAGCAAGGGAAATTGAGGGTGAGGAAACCCGAGATCTTCATTTGGCAGAGGAAAGAGGTATACACCTACATGAAGATTTTGATATTGATGAAGAGACGAGATTCTCATCAGTCTGCAGAGGTAAAGGTGCTGATGACAGTGGACATGATGAAAGAGAGGATGTACGAATAGATTCCCGGAATTCTGAAACATTTGCTCCAGTCGTCAAGAAATCCAGTGATTTAGCCAGTGGAGAAGGCAATGATGGAGCTCGATTATCATCAGATTCCTCTGTTACGGATCTCCCCCATTCGTCTCAGTCAAATATTGGCATCGATGTAAGCCGCTCTAGTTCTTATGATCCTGCTAAACAATTAACATCTGAACTCCCTGCCAAAAGTTACTTATCTTTCGATGGAGAAAGGGTTCAGGATTCAATCGATGATCAATATGGAGCAAAGGATAGTAGCAAGGAAGAAAATAAGGCTGAGGATGATCAACCGTCAAAATCTGAGGATTCACAGTCATTGCTCAACTTGAAGAAAGATGGCTCTGATAAAGGGGTATTAAATGCCTCCTCTTTTCCCCCTTCATCTCATGTTTTATCAAGTACTCAAGAAAAGGCAGGGTCACCTGGAGATATAGTTGAGAGTTCAGCTTCGAGCAAAGTGAATGGGGATACAAAGTCTGAGAACTCCCATGGAAGACCAGGTAGTTCTGCTTCATCTGCTTCAGAGCGTGTGGGAGGTTTGACAGCATCTTCTCGTCCTGGCCTCTCACCAAGTTCTTCAGTTGGTTCATTATCTTCTGAAAGATCAACTCTGAATCCCAATGCAAAGGAATTCAAGCTCAACCCAAATGCAAGGAGTTTCATTCCATCTCAAACACCTAGACCTCCCTCTCCAGTGTCTGATACTTCATTCTATTTCCCAACTAATGTAACTAGTTTGCCACATATGCCGACCATGTCCATTGGTGTTGGGATGGGACCTACATTTACGGGGCCACAACAGGCCATATATAATCCACAGGTTGCACAAGTGCCATTGACATATTTTCATCCAAATGGACCACAGTATGGGCAGCTTGTTGGTCATCCCAGGCAAGTCATGTACATGCCGCCAGGATACATGCCTGAAACGCAGTATAGGGGACGGGATTATTAG 1959 0.4242 MVACLRLCLAMNGSCQSWLIINMNLQQVGKPKSFNGHGRRKSEREGAFRSENKIQSGKSNASRLASTVTGTKGDNHESPSRDRLLYIATCLIGQQVEVHVKSGSIYSGIFHAANADKDFGIILKMARLMKDSSVRGKRSGVEFVSQAPSKILIISGKDLVQIMAKDVAVTQDELCGEAHHEMHQEIMVDSAISQSLHVEMERELLPWVPDGDDSQCPELENIFDGPWNRGWDQFERNETLFGVKSTFNEELYTTRLEKGPHMRELEKQALRIAREIEGEETRDLHLAEERGIHLHEDFDIDEETRFSSVCRGKGADDSGHDEREDVRIDSRNSETFAPVVKKSSDLASGEGNDGARLSSDSSVTDLPHSSQSNIGIDVSRSSSYDPAKQLTSELPAKSYLSFDGERVQDSIDDQYGAKDSSKEENKAEDDQPSKSEDSQSLLNLKKDGSDKGVLNASSFPPSSHVLSSTQEKAGSPGDIVESSASSKVNGDTKSENSHGRPGSSASSASERVGGLTASSRPGLSPSSSVGSLSSERSTLNPNAKEFKLNPNARSFIPSQTPRPPSPVSDTSFYFPTNVTSLPHMPTMSIGVGMGPTFTGPQQAIYNPQVAQVPLTYFHPNGPQYGQLVGHPRQVMYMPPGYMPETQYRGRDY 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1166 652 Gene3D - 89 166 - -
Lele39g1166 652 PANTHER ATAXIN 2-RELATED 56 643 IPR045117 GO:0003723
Lele39g1166 652 MobiDBLite consensus disorder prediction 31 79 - -
Lele39g1166 652 Pfam LsmAD domain 241 311 IPR009604 -
Lele39g1166 652 Coils Coil 262 282 - -
Lele39g1166 652 MobiDBLite consensus disorder prediction 354 382 - -
Lele39g1166 652 MobiDBLite consensus disorder prediction 406 444 - -
Lele39g1166 652 SMART LsmAD_2 241 312 IPR009604 -
Lele39g1166 652 MobiDBLite consensus disorder prediction 36 51 - -
Lele39g1166 652 MobiDBLite consensus disorder prediction 309 331 - -
Lele39g1166 652 MobiDBLite consensus disorder prediction 455 556 - -
Lele39g1166 652 Pfam Ataxin 2 SM domain 81 165 IPR025852 -
Lele39g1166 652 MobiDBLite consensus disorder prediction 405 569 - -
Lele39g1166 652 MobiDBLite consensus disorder prediction 309 382 - -
Lele39g1166 652 MobiDBLite consensus disorder prediction 52 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1166 Lele-ChrLele39 20345646 20351449 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1166 39 20345646 20351449 Lele39g1166 39 20345646 20351449 ECH
Lele37g0260 37 2063322 2066857 Lele39g1166 39 20345646 20351449 hybridization
Lele38g0255 38 2026165 2030916 Lele39g1166 39 20345646 20351449 hybridization