Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1165 ATGAAGTCTTCGTGCGAGAAAGATTTTAGCCTATGTTCTGCTCATTCAACATCCCATGATTTTCTCAGATGCTCATCGTGGAAAACATTATCTGGATTTCATGGACAAGAATCATCTATGTCCAAAAGTTTGAGCTTAAAAATGGGAGTTCTTCCACAACAACGTCTTAATACTAAGCTGTTTAGTTTTCCATTTCAAGAACTGGACTCATCTTCAACCGAACCAACTGATCAATCTTATCCTAAAGGGGATTCAGCAAACTCAGGTCAATTTTCTATGCAATATAGCAGTTCTTCTGCTCATTCAAGCAGAACTGAGGGAAAGTCCTTGGGAGGTCTCATCAGTTCATCTGTAGGGATGCAGGATTTTGCCTTCCCTTCTTCACTTCTGGATCATAACAATTCAATTATTCATCATGCTCAACTAATGGGAATGGCTCCTCTTCGAGTTCCACTTCCACTTGATTTCACAGAAGAACCTATATTTGTGAATGCAAAACAATATCACGCGATTCTGAGGCGAAGGCATTACCGATCAAAACTCGAATCACAGAACAAGCTGAACAAAATTCGGAAACCATATCTTCATGAGTCTCGTCACCTACATGCATTGAAGAGAGCCAGAGGTTCTGGTGGACGCTTTCTTAACACCAAAAAGCTCCAAGAATCATCATCAGAACTACATTCAGCAAACCAATTTACTACTCCAGACTCTGAATTTCTGGGGTTAGAAAATTGCAGAGACATCACAGGTTCTGAGGTGACGAATGCTTCGAACAGCGACAACATCTTCCAGCAGCAACATGAATCAAATTCGAGGTTGTGTGGAAGATATCCTTCTCACATTGGAAGCAACATGCAAAGTTTCTCAGTTGATAAGGGTGGTGGTGATGAGAATCAGCATCGTGTATCTGTCTTCATGTGA 924 0.4091 MKSSCEKDFSLCSAHSTSHDFLRCSSWKTLSGFHGQESSMSKSLSLKMGVLPQQRLNTKLFSFPFQELDSSSTEPTDQSYPKGDSANSGQFSMQYSSSSAHSSRTEGKSLGGLISSSVGMQDFAFPSSLLDHNNSIIHHAQLMGMAPLRVPLPLDFTEEPIFVNAKQYHAILRRRHYRSKLESQNKLNKIRKPYLHESRHLHALKRARGSGGRFLNTKKLQESSSELHSANQFTTPDSEFLGLENCRDITGSEVTNASNSDNIFQQQHESNSRLCGRYPSHIGSNMQSFSVDKGGGDENQHRVSVFM 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1165 307 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 159 214 IPR001289 GO:0003700|GO:0006355
Lele39g1165 307 SMART cbf3 156 217 IPR001289 GO:0003700|GO:0006355
Lele39g1165 307 Gene3D - 157 218 - -
Lele39g1165 307 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 54 274 IPR001289 GO:0003700|GO:0006355
Lele39g1165 307 MobiDBLite consensus disorder prediction 68 107 - -
Lele39g1165 307 ProSiteProfiles NF-YA/HAP2 family profile. 157 217 IPR001289 GO:0003700|GO:0006355
Lele39g1165 307 PRINTS CCAAT-binding transcription factor subunit B signature 191 214 IPR001289 GO:0003700|GO:0006355
Lele39g1165 307 PRINTS CCAAT-binding transcription factor subunit B signature 160 182 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1165 Lele-ChrLele39 20338799 20341119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1165 25 230 CCAAT-HAP2 Transcription Factor Family AT1G54160 42.041 2.49e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele39g1165 CBFB_NFYA 4.3e-25 No_clan