Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1164 ATGGACGAGCGAACAAATCATACCCCTCGCACTGTTGAAGAGGTTTTCAGGGATTTCAAGGGCCGAAGAGCTGGAATAATTAAAGCCCTTACAACGGGTGCAGCATTGGTTATGACCAGTGAAAGGCTCAATTTGGCATTGGTACTATCTGATTGGCAGTTTGTTAGTAGACTGTATAGTCAAGCTATACCTTGTCTTGTAAGATGGACAGAGTTAACTTTAGGTATAACCCACAGGGCCTCATTTGCAGTTGGAATTATATACATTGGTGTGGATTACAATTCCTGGTTGATTAGAAAATTGGTTTCTGTTGTATGGTTCCGGATAATTGCCTTTCTCTCGCTTTACTTGGTTGCAAAAGCTTTCTTGCTGATTATTTCTTTTGGTTATGCTGTTGCAGATGTTGAAGATTTTTACAACCAAAGTGACCCTGAGAAGGAGAATTTGTGCTTGTATGGACTTCCTAGTGAGCAGTGGGAAGTGAACTTACCTGCTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTTCTGGGAATTAATTTTGCCAGGGATGGCATGCAAGAAAAAGACTGGCTATCTTTAGTTGCAGTCCATAGTGATACATGGTTACTTTCTGTGGCCTTCTATTTTGGAGCCAGATTTGGGTTTGATAGAGCTGACAGGAAACGACTTTTCAATATGATCAATGAACTGCCCACAATTTTTGAAGTTGTTACTGGCACAGCAAAGAAAGAAGTGAAGGAGAAGTCTTCAACTCATAGTGGCAGCAAATCTAAGTCAGGCTCTAAGGCGAGGGCTTCAGAAATTCAGGGTAGACAATCGAAGGTGTTTCAACCAAAAGATGAGGATGAAGTTCCAGACGAGCAAGATGAAGATGATGAACATGGGGATACCTTGTGCGGGGCATGCGGTGAGAATTACGGTACTGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATTACCCCTGCAAGGGCAGAGCATATCAAGCAATACAAATGTCCATCATGCAGTAACAAGAGAGTTCGGTGCTAA 1062 0.4275 MDERTNHTPRTVEEVFRDFKGRRAGIIKALTTGAALVMTSERLNLALVLSDWQFVSRLYSQAIPCLVRWTELTLGITHRASFAVGIIYIGVDYNSWLIRKLVSVVWFRIIAFLSLYLVAKAFLLIISFGYAVADVEDFYNQSDPEKENLCLYGLPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLSVAFYFGARFGFDRADRKRLFNMINELPTIFEVVTGTAKKEVKEKSSTHSGSKSKSGSKARASEIQGRQSKVFQPKDEDEVPDEQDEDDEHGDTLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRVRC 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1164 353 CDD PHD_AL_plant 299 349 IPR044104 -
Lele39g1164 353 Pfam PHD-finger 300 349 IPR019787 -
Lele39g1164 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 348 IPR013083 -
Lele39g1164 353 PANTHER CPG BINDING PROTEIN 8 352 IPR045104 GO:0006355|GO:0042393
Lele39g1164 353 Pfam Alfin 133 240 IPR021998 GO:0006355|GO:0042393
Lele39g1164 353 Pfam Alfin 11 36 IPR021998 GO:0006355|GO:0042393
Lele39g1164 353 ProSiteProfiles Zinc finger PHD-type profile. 297 349 IPR019787 -
Lele39g1164 353 SUPERFAMILY FYVE/PHD zinc finger 288 350 IPR011011 -
Lele39g1164 353 MobiDBLite consensus disorder prediction 255 274 - -
Lele39g1164 353 MobiDBLite consensus disorder prediction 246 294 - -
Lele39g1164 353 FunFam PHD finger alfin-like protein 292 348 - -
Lele39g1164 353 ProSitePatterns Zinc finger PHD-type signature. 300 346 IPR019786 -
Lele39g1164 353 SMART PHD_3 299 347 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1164 Lele-ChrLele39 20333245 20337273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1164 132 352 Alfin-like Transcription Factor Family AT3G42790 72.851 8.55e-104 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lele39g1164 Alfin 3.8e-55 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1164 39 20333245 20337273 Lele40g0241 40 1899087 1902805 ECH
Lele39g1164 39 20333245 20337273 Lele39g1164 39 20333245 20337273 ECH
Lele37g0261 37 2068189 2072223 Lele39g1164 39 20333245 20337273 hybridization
Lele38g0257 38 2038943 2047771 Lele39g1164 39 20333245 20337273 hybridization