Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1163 ATGAGTGAGAGCGATGCCGAGGAAGAATCGGCGCAAGAAGTTCAAGTCCCGGCTGATATTGATTGGCATATGCTTGATAAATCGAAGTTTTTCTTCCTCGGTGCTGCCCTTTTCTCGGGGGTTTCAGCAACTCTGTACCCGATTGTTGTACTGAAAACCAGGCAGCAAGTAGCTCAATCCCAACTTTCTTGTATACAAACTGCATTTTCACTTGTTAGGCATGAGGGTTTCCGAGCATTGTACAGAGGTTTTGGTACCTCCTTAATGGGTACAATTCCAGCTCGAGCACTATATATGGCTGCCCTGGAGATTACCAAGAGTAATGTAGGTACTGTCACGGTTGGGTTAGGGCTTGCGGAACCAACTGCGGCTACTGTCGCCAATGCAGCTGCAGGTTTGAGTGCTGCCATGGCAGCTCAACTCGTGTGGACCCCTGTTGATGTTGTGAGCCAGAGGTTGATGGTTCAAGGTGGTTGTAATTCAAATAATCCTAAGGCTTCAGCACATCTATATGCCAATGGGATTGATGCATTCAGGAAAATTCTGATCACAGATGGTCCCAGAGGTTTGTATAGGGGGTTTGGGATATCGATTTTGACATATGCACCCTCAAATGCAGTTTGGTGGGCTTCATACTCTGTTGCACAAAGGCTGATTTGGAATGGAATTGGGTATTACTGGAGCAAGAAAGATGATAAGAGTGCCGATTCAGTGGCTGATGTATTAAGACCAGATTCAAGAACTGTAATGGCAGTTCAGGGAGTCAGTGCAGCAATGGCTGGTGGCATGTCTGCCTTAATTACAATGCCACTAGATACGATCAAGACAAGACTTCAGGTCTTGGATGGTGATGAGAATGGCCGTCGAGGACCAACAGTTATGCAGACTGTGAGGAAATTGCTCAGGGAAGGTGGTTGGATGGCCTGCTACAGGGGGTTGGGACCTCGATGGGCTTCAATGTCAATGTCTGCAACAACAATGATCACCACATATGAGTTTGTAAAACGGCTTTCAACAAAGAATCAAGAAGTTCTGACAAGATAG 1044 0.4636 MSESDAEEESAQEVQVPADIDWHMLDKSKFFFLGAALFSGVSATLYPIVVLKTRQQVAQSQLSCIQTAFSLVRHEGFRALYRGFGTSLMGTIPARALYMAALEITKSNVGTVTVGLGLAEPTAATVANAAAGLSAAMAAQLVWTPVDVVSQRLMVQGGCNSNNPKASAHLYANGIDAFRKILITDGPRGLYRGFGISILTYAPSNAVWWASYSVAQRLIWNGIGYYWSKKDDKSADSVADVLRPDSRTVMAVQGVSAAMAGGMSALITMPLDTIKTRLQVLDGDENGRRGPTVMQTVRKLLREGGWMACYRGLGPRWASMSMSATTMITTYEFVKRLSTKNQEVLTR 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1163 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 248 337 IPR018108 -
Lele39g1163 347 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 9 343 - -
Lele39g1163 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Lele39g1163 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 218 IPR018108 -
Lele39g1163 347 Gene3D Mitochondrial carrier domain 29 345 IPR023395 -
Lele39g1163 347 SUPERFAMILY Mitochondrial carrier 24 334 IPR023395 -
Lele39g1163 347 Pfam Mitochondrial carrier protein 125 220 IPR018108 -
Lele39g1163 347 Pfam Mitochondrial carrier protein 251 341 IPR018108 -
Lele39g1163 347 Pfam Mitochondrial carrier protein 37 107 IPR018108 -
Lele39g1163 347 PRINTS Mitochondrial carrier protein signature 83 103 IPR002067 GO:0055085
Lele39g1163 347 PRINTS Mitochondrial carrier protein signature 31 44 IPR002067 GO:0055085
Lele39g1163 347 PRINTS Mitochondrial carrier protein signature 257 279 IPR002067 GO:0055085
Lele39g1163 347 PRINTS Mitochondrial carrier protein signature 191 209 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1163 Lele-ChrLele39 20329340 20330383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1163 1 343 Chloroplast and Mitochondria Gene Families AT1G72820 74.277 0.0 511
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1163 39 20329340 20330383 Lele40g0242 40 1908313 1909356 ECH
Lele39g1163 39 20329340 20330383 Lele39g1163 39 20329340 20330383 ECH
Lele37g0262 37 2075418 2076461 Lele39g1163 39 20329340 20330383 hybridization
Lele38g0258 38 2047920 2050607 Lele39g1163 39 20329340 20330383 hybridization