Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1146 ATGGGAAATCAAAAGCATAAGTGGACCGCTGAGGAAGAAGAAGCTTTGCTCGCTGGCATTGCGAAGCATGGCCCCGGCAAGTGGAAGAATATCCTCAAAGATCCCGAATTTGCCTCTTTTCTCACTCACCGTTCCAACATCGATCTTAAGGACAAATGGCGAAATTTAAGTGTTAGTACTTCATCTCAAGGATCTAAAGAAAAATCTAGGAATCCAAAGATTAAAACTACGGAACCTGCTACACCTGCTGGCACACAAAATGCCTTTGTTGCTCCTCCACTTCGTCAAAGTGCAGGTTCTGATGCCGCCACAGATGATTCTTCTCACAATGCACAGGATGTTAAACATGCTCCACAGTACAATGCAATGATTTTTGAAGCCCTATCAATGATAAACTCCAATGGATCTGACCTAAATGCTATTGTTAGCTTCATTGAGCAAAAGCATGAGGTTCCTCAAAATTTCAGACGAGCAGTAGGTGCAAGGTTGAGGAAGCTTGTTGACCAAGGAAAACTCGAAAAGGTACAAAATTGTTACAGGATAAAGAGAGCTACACCTCCCGAGACAAAACCACCTGTACCAAAACAAAACTATTCCAGGGCACGTCAACCACCAGCCTCTGGATTTACGGCATCTCATGAGAAGGTAACAGATGCTGCGGAGATTGCGGCATACAGAATTGCTGAAGCAGAGCACAAATCTCGTTGGGCTGCTGAAGCAATTAAGGAGGCAGAAAAATTCTCAAAGTTAGCGGAAGATGCTGATGCAATGCTACAGCTAGCGCAAGATATTTATGAGCAATGTTCACGGCGCGAAATCATGGTCTTGGCTTAA 834 0.44 MGNQKHKWTAEEEEALLAGIAKHGPGKWKNILKDPEFASFLTHRSNIDLKDKWRNLSVSTSSQGSKEKSRNPKIKTTEPATPAGTQNAFVAPPLRQSAGSDAATDDSSHNAQDVKHAPQYNAMIFEALSMINSNGSDLNAIVSFIEQKHEVPQNFRRAVGARLRKLVDQGKLEKVQNCYRIKRATPPETKPPVPKQNYSRARQPPASGFTASHEKVTDAAEIAAYRIAEAEHKSRWAAEAIKEAEKFSKLAEDADAMLQLAQDIYEQCSRREIMVLA 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1146 277 SUPERFAMILY "Winged helix" DNA-binding domain 116 195 IPR036390 -
Lele39g1146 277 PANTHER SINGLE MYB HISTONE 4 1 276 IPR044597 GO:0003691
Lele39g1146 277 MobiDBLite consensus disorder prediction 55 88 - -
Lele39g1146 277 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Lele39g1146 277 MobiDBLite consensus disorder prediction 96 115 - -
Lele39g1146 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Lele39g1146 277 SMART sant 4 59 IPR001005 -
Lele39g1146 277 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Lele39g1146 277 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 116 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele39g1146 277 Gene3D - 8 80 - -
Lele39g1146 277 Gene3D - 112 193 IPR036388 -
Lele39g1146 277 MobiDBLite consensus disorder prediction 184 213 - -
Lele39g1146 277 Pfam Myb-like DNA-binding domain 6 56 IPR001005 -
Lele39g1146 277 FunFam Telomere repeat-binding factor 1 2 58 - -
Lele39g1146 277 CDD SANT_TRF 6 56 - -
Lele39g1146 277 FunFam Telomere repeat-binding factor 1 8 87 - -
Lele39g1146 277 Pfam linker histone H1 and H5 family 118 176 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele39g1146 277 SMART h15plus2 114 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1146 Lele-ChrLele39 19989141 19992377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1146 1 276 Single Myb Histone (SMH) Gene Family AT1G17520 49.827 5.99e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele39g1146 Linker_histone 2.2e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0278 37 2355227 2356042 Lele39g1146 39 19989141 19992377 hybridization
Lele38g0269 38 2155089 2157738 Lele39g1146 39 19989141 19992377 hybridization