Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1144 ATGGCAGGTTTGGCTCCAGAAGGAACTCAATTTGATGCTCGTCAATATGATGCTAAGATGAACGAATGGCGCAATCTGGGGCTGGCAAAACAGCAACTTTTAGCTCTGGAATTTTGCAGCAACTTGCATGATTATGGGTTAGTTCAGTGCCAGGCCTTGGTTTTGGCGCCAACAAGGGAGCTGGCACAGCAAATAAAGAAAGTTATTAGAGCTCTTGGTGATTACCTTGGTGTGAGAGTTCATGCTTGCGTTGAGGGATCAAGTGTACGTGAAGATCAACGAATTCTCCAATCTGGTGTTCATGTTGTTGTTGGCACTCCCGGTCGTGTGTTTGACATGCTCCGAAGGAAATCTCTTCTATCAGATCACATAAAGATGTTTGTGTTAGATGAAGCTGATGAAATGCTTTCACGTGGTTTCAAGGACCAGTTGGTTATAAACTATGATCTGCCAACTCAACCTGAGAATTATCTTCAAAGGATTGGAAGAAGTGGAAGGTTTGGAAGAAAAGGTGTTTCTACAAACTTTGTTACTTATGATGATTTGAGGATGTTGTCTGATATTCAGAAGTTCTATAATGTTACCATAGATGAGCTGCCATCAAATGTTGCTGATCTGCTTTGA 624 0.4183 MAGLAPEGTQFDARQYDAKMNEWRNLGLAKQQLLALEFCSNLHDYGLVQCQALVLAPTRELAQQIKKVIRALGDYLGVRVHACVEGSSVREDQRILQSGVHVVVGTPGRVFDMLRRKSLLSDHIKMFVLDEADEMLSRGFKDQLVINYDLPTQPENYLQRIGRSGRFGRKGVSTNFVTYDDLRMLSDIQKFYNVTIDELPSNVADLL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1144 207 Pfam DEAD/DEAH box helicase 49 144 IPR011545 GO:0003676|GO:0005524
Lele39g1144 207 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 41 207 IPR001650 -
Lele39g1144 207 Gene3D - 44 163 IPR027417 -
Lele39g1144 207 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 165 IPR014001 -
Lele39g1144 207 SMART ultradead3 24 180 IPR014001 -
Lele39g1144 207 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 128 136 IPR000629 -
Lele39g1144 207 PANTHER RNA HELICASE 144 191 - -
Lele39g1144 207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 184 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1144 Lele-ChrLele39 19980355 19982395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1144 134 185 Eukaryotic Initiation Factors Gene Family AT3G13920 72.727 5.10e-19 82.4