Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1130 ATGGGTGCTTCAGGAAGATGGTTGAAATCCCTCATTTCTCATAAAAAGCCCTCCTCAAATGACCCTGAGAAGGTTAGTGATAAGAGTAAGAAGAAATGGAGGCTATGGAGAAGCTCTTCAGAAGGTTTTGGATTTGGGTCGTCCACGAAAAGCATGAAGAAGGTACGGGATGCTGCATCAGAGAGGTCTGATTCATCTACGTTTGTTTTGGATGATTCACTTGCTTCTGCCATGGCTACTGTGGCAGTCCGAGCTGCTCCTAAGGATTTCATGCAAATCAAGCAGGAATGGTCTGCCATTCGCATTCAATCTGTGTTTCGAGGTTTCTTGGCTAGACGAGCTTTGAGGGCATTGAAGGCAGTGGTGAGGCTGCAAGCAATATTTAGAGGAAGGCAAGTAAGAAAGCTAGCAGCTGTAGCACTAAGGTGCATGCAAGCTCTTGTGAAAGGTCAGGCACGCCTGAGAGCAATGAATGTAAGGATGTCTCCAGAAGGGAAGGCTGTTCAGAAATTATTAGATGATTGTCGCAGACAATCTTCTGATCCTGTTAAGCAGGCTGAGGAAGGATGGTGTGGCATTCCAGGAACTGTAGATTATCTTAAAGCAAAGATACAAATGAAGCAAGAGGCAGTCATCAAAAGGGAGAGAGCAATGGCTTATTCTCTATCTGCTCAGTCACGAGTAAGTGCTAGTCCAAAATCAAGAGGAACAAAGACAGTGAACAAGAGCTTGTTGTTAGAGCAATGGATGACAGTGAAGCCATGGGAAAGCAGGTTGATGGAAGAAGGTGGTACCTATTATGCCTCACCTGAAATTACTCCTCCATTGTCCAGGAAAAGCAATGAACTTGTTCAAGAACAACAAAAAGGCCTAATCGAAGCAAGAAAGAATGGTGGGATTGTGAACACGACTATTTCCAATAGCTCTCTTACAACAACGAGCCAATCGACTCTGACATCATCATCTTCAACCTCGAGTTCTGAATGCTGCACATTTGATGATAGTCCTGAGTCATCTACTTCATACACATGCATATCACAATCTGTACCATTTAGCAGCATTACTCTTGCGGAGGAAACAAGAGAGGAAAGGAGTGTTCATAGACCTAGCTATATGAATCTGACAGAGTCAACAAGGGCCAAACAAAGACCTTGTGGTTATATGATGAATCTGCGTGGAGATTGTAGGAGTATTTGTTCTGGTTCTGATCCTTGTGTTAATTTATGGAAAGATGTCTGTGCAACACCTGAAAGGTTGTCTTACCAAAAGAGAAATTCTGTGAGACAACAAAGGTTGGCTTAG 1302 0.4339 MGASGRWLKSLISHKKPSSNDPEKVSDKSKKKWRLWRSSSEGFGFGSSTKSMKKVRDAASERSDSSTFVLDDSLASAMATVAVRAAPKDFMQIKQEWSAIRIQSVFRGFLARRALRALKAVVRLQAIFRGRQVRKLAAVALRCMQALVKGQARLRAMNVRMSPEGKAVQKLLDDCRRQSSDPVKQAEEGWCGIPGTVDYLKAKIQMKQEAVIKRERAMAYSLSAQSRVSASPKSRGTKTVNKSLLLEQWMTVKPWESRLMEEGGTYYASPEITPPLSRKSNELVQEQQKGLIEARKNGGIVNTTISNSSLTTTSQSTLTSSSSTSSSECCTFDDSPESSTSYTCISQSVPFSSITLAEETREERSVHRPSYMNLTESTRAKQRPCGYMMNLRGDCRSICSGSDPCVNLWKDVCATPERLSYQKRNSVRQQRLA 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1130 433 ProSiteProfiles IQ motif profile. 95 123 IPR000048 GO:0005515
Lele39g1130 433 MobiDBLite consensus disorder prediction 1 32 - -
Lele39g1130 433 PANTHER IQ-DOMAIN 5-RELATED 1 384 - -
Lele39g1130 433 MobiDBLite consensus disorder prediction 16 32 - -
Lele39g1130 433 Gene3D - 92 148 - -
Lele39g1130 433 MobiDBLite consensus disorder prediction 305 325 - -
Lele39g1130 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 136 IPR027417 -
Lele39g1130 433 SMART iq_5 94 116 IPR000048 GO:0005515
Lele39g1130 433 SMART iq_5 117 138 IPR000048 GO:0005515
Lele39g1130 433 Pfam IQ calmodulin-binding motif 97 116 IPR000048 GO:0005515
Lele39g1130 433 Pfam IQ calmodulin-binding motif 119 135 IPR000048 GO:0005515
Lele39g1130 433 ProSiteProfiles IQ motif profile. 119 146 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1130 Lele-ChrLele39 19803104 19805286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1130 1 412 IQD Protein Family AT1G72670 41.761 6.09e-84 261