LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele39g1129	ATGAATGCGTTAAAACCAAAGAATGATCCTGATAAGGAAGACCATCCACAAGTTTTACCAAGAATAAGTGAGGAAAGAAGAAAGATTAAGCTAAGTGCAGGAATCATGGGTCATCACTCTTGCTGTAACAAGCAGAAGGTGAAAAGAGGATTATGGTCTCCTGAAGAAGACGAGAAGCTCATCAACTACATCACCACTTATGGCCATGGTTGCTGGAGCTCTGTCCCTAAACTTGCAGGACTTCAGAGATGTGGAAAAAGTTGCAGATTGAGATGGATAAATTATCTGAGACCTGATCTGAAACGAGGAAGCTTCTCTCCTCAAGAAGCAGCTCTCGTTATTGAACTCCATAGCATTCTGGGCAACAGGTGGGCTCAGATAGCAAAGCACCTACCTGGAAGAACAGACAACGAGGTGAAGAATTTTTGGAATTCAAGCGTCAAGAAGAAGCTTCTTTCTCATCATGATCATCTTCTTCTTCCTACTTTAACAACTTATAATGGTACTTCCATGGAAAGCTTCTTCCCTCTTACTCCAAACCCTAAGAACCCTAACATGATCCTAAACTCTCACCATAATCATCACCAAGATCACCAGATGTACCTTCCCACATGTTCATCACTTATTCAAGGTTTTCATCAATTTGATCATCATGAAGCTTCTGAAGATCTTAAGATAGGCAATCTCCTTCATCATGTTCAGAATCCTAATAATTTGCAAGAAATTACTCCATCCAATAGTAGTATTAATCCATCTTCTTATGAAGATACTTGGTCACTGGTGAATCAAGAACATACCAATAATCTGTTATCCCCACATTACATTGATGAGAAATTCATGAACCCAAGTTCAACTTTGCAGCAGCATCATGAGAGTCAACCTGTGGATCCTCGTATTGAACATAAAATGTTTCAGAGTACTATTGAGGATTATAATGTTTGTGGCGTCGTCCCGTATTCATCTTTATCTGCTTCACAAGAACAAGAACCTCTTAATATTGCAAGAATTATTCATCAGAGGTATCCATCTTCTGGTGGTTTTGGTTACCCACAAGATCATGAAAGTCAAATGGCTGATGTGGCAGCCAATCACGTGGAGTTCATAGACGCCATCATGTCGTCGTTGCCAATATCGTCCTCGTCGTCCTCGTCATCATCGCTAACATCAAACAATCAAGTGGTCACAAATACCCCTAATTTTCCTCCATGCTGGGAGCCATGA	1221	0.4054	MNALKPKNDPDKEDHPQVLPRISEERRKIKLSAGIMGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALVIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSVKKKLLSHHDHLLLPTLTTYNGTSMESFFPLTPNPKNPNMILNSHHNHHQDHQMYLPTCSSLIQGFHQFDHHEASEDLKIGNLLHHVQNPNNLQEITPSNSSINPSSYEDTWSLVNQEHTNNLLSPHYIDEKFMNPSSTLQQHHESQPVDPRIEHKMFQSTIEDYNVCGVVPYSSLSASQEQEPLNIARIIHQRYPSSGGFGYPQDHESQMADVAANHVEFIDAIMSSLPISSSSSSSSSLTSNNQVVTNTPNFPPCWEP	406

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele39g1129	406	Gene3D	-	46	102	-	-
	Lele39g1129	406	MobiDBLite	consensus disorder prediction	379	406	-	-
	Lele39g1129	406	FunFam	MYB transcription factor	41	101	-	-
	Lele39g1129	406	ProSiteProfiles	Myb-like domain profile.	44	96	IPR001005	-
	Lele39g1129	406	SUPERFAMILY	Homeodomain-like	46	143	IPR009057	-
	Lele39g1129	406	Gene3D	-	104	151	-	-
	Lele39g1129	406	ProSiteProfiles	Myb-like domain profile.	97	147	IPR001005	-
	Lele39g1129	406	FunFam	Myb transcription factor	104	151	-	-
	Lele39g1129	406	CDD	SANT	52	96	IPR001005	-
	Lele39g1129	406	Pfam	Myb-like DNA-binding domain	49	96	IPR001005	-
	Lele39g1129	406	Pfam	Myb-like DNA-binding domain	102	144	IPR001005	-
	Lele39g1129	406	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	44	96	IPR017930	-
	Lele39g1129	406	SMART	sant	101	149	IPR001005	-
	Lele39g1129	406	SMART	sant	48	98	IPR001005	-
	Lele39g1129	406	PANTHER	MYB DOMAIN PROTEIN 55	36	350	-	-
	Lele39g1129	406	MobiDBLite	consensus disorder prediction	1	21	-	-
	Lele39g1129	406	MobiDBLite	consensus disorder prediction	379	399	-	-
	Lele39g1129	406	CDD	SANT	104	144	IPR001005	-
	Lele39g1129	406	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	97	151	IPR017930	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele39g1129	Lele-ChrLele39	19788292	19790357	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele39g1129	36	153	MYB Transcription Factor Family	AT3G13890	94.915	2.97e-80	249

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele39g1129		Myb_DNA-binding	1.6e-14	CL0123