Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1121 ATGCTCCACCTCCATCATCAGCAACAGAATCATCATCAGAATCAGAATATGTCTAATTTGATGACTACTACGTCGGCATCTGCTGAATCCAATGTTTCAATTTATCCTCCTCATTATCAACAATACTTGGCTTCGTCTCAATTATCTCAGCCAGTGAAGAAAAAGAGAAACCTCCCTGGCAACCCAGACCCAGAAGCTGAAGTGATCGCCTTGTCTCCAAAGACTCTGCTAGCGACGAACAGGTTCATATGCGAGATCTGCAACAAAGGGTTTCAGAGGGACCAGAATCTGCAGCTTCATAGAAGAGGGCACAATCTGCCATGGAAGCTGAAGCAGAGAACGAGCAAAGAGATTATAAGGAAGAAGGTGTACGTGTGCCCAGAACCAACCTGCGTCCACCATGAACCTTCAAGAGCGCTCGGAGACCTCACAGGGATCAAGAAGCACTTCTGCAGAAAGCACGGAGAGAAGAAGTGGAAATGCGATAAGTGCTCCAAAAGGTACGCTGTTCAATCCGATTGGAAGGCTCATTCCAAAACTTGTGGCACCAGAGACTACAGATGTGACTGTGGAACTCTCTTCTCTAGGAGGGACAGTTTCACAACCCACAGAGCATTCTGTGATGCATTAGCAGAAGAGAGTGCAAGATCATCACGAAACCACCACCAAGTTCTTCTTCTTCCCTCTTCACAACCGCCACACTTAAACACTACTCCTAATTATAATAATAATCCCCAGACCCAATTCAATAATAATATTAATAATCCCTTGAAAAACGAGATCACTCTCACTTCTTCTTCTTCTCCTCCTTCTGGTCTCAGGCAAGGATTTCATCATATTCCCTCTTGGCTTGGTGGCCCACCCACTAGCTCTTCTATAGATCACCACCGTCAACTTCATCAGCTTATAAGCCATGAAAGTCCAAACCCTAACCCTACTGCTACTAGCCTCGGCCCCACCACCACCAGCACCTGTCTTCTTCCAGGTCCAGCGCCTTCTTCGCACATGTCTGCCACAGCCTTGCTTCAGAAAGCGGCTCAGATGGGTTCGACTCTTAGCAAAACCGGTTCGTCCATTCTCAGGACCCACAACAACGCCACCACTAGTCACGTGTCTGCTACTACCACTGATCTCTCTGCCGGTTTGAAACCTCAAGGTCACGTGACCACGACCAGCCATGGCTTCTTCTTGTCTCCTTTCTCTTTCTCTTCTACTACTTCTGACCATCAGTTTGGAGTTGGTGCGGTTTCTTTCGAGGAGGCTTTGATTATTAATGGTGGGATTTTGAATACCAATAAGAAAGATGCCAACATGCATGACGGTGCTCTTTTCAAAACAACCGACTCCGGTGGCAGCGGTAGGAGAAGTGGCGGTGGCAGTGGTAGTGTTGGGAACGAGGGTTTGACGAGAGATTTCTTGGGTCTGAAACCTCTTTCCCATAATGATATTCTCAGTATGGCTGGTATAGGAAACTGCATGACCTCTTCTTCTTCCTCCTCCCGTTGTGATCAACCAATTCATCAATCCCAATGGCAAGCTTAA 1542 0.4702 MLHLHHQQQNHHQNQNMSNLMTTTSASAESNVSIYPPHYQQYLASSQLSQPVKKKRNLPGNPDPEAEVIALSPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIIRKKVYVCPEPTCVHHEPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTRDYRCDCGTLFSRRDSFTTHRAFCDALAEESARSSRNHHQVLLLPSSQPPHLNTTPNYNNNPQTQFNNNINNPLKNEITLTSSSSPPSGLRQGFHHIPSWLGGPPTSSSIDHHRQLHQLISHESPNPNPTATSLGPTTTSTCLLPGPAPSSHMSATALLQKAAQMGSTLSKTGSSILRTHNNATTSHVSATTTDLSAGLKPQGHVTTTSHGFFLSPFSFSSTTSDHQFGVGAVSFEEALIINGGILNTNKKDANMHDGALFKTTDSGGSGRRSGGGSGSVGNEGLTRDFLGLKPLSHNDILSMAGIGNCMTSSSSSSRCDQPIHQSQWQA 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1121 513 MobiDBLite consensus disorder prediction 228 273 - -
Lele39g1121 513 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 494 IPR031140 -
Lele39g1121 513 SMART c2h2final6 159 179 IPR013087 -
Lele39g1121 513 SMART c2h2final6 124 154 IPR013087 -
Lele39g1121 513 SMART c2h2final6 82 104 IPR013087 -
Lele39g1121 513 MobiDBLite consensus disorder prediction 441 466 - -
Lele39g1121 513 Pfam Zinc-finger double-stranded RNA-binding 82 104 IPR022755 -
Lele39g1121 513 FunFam protein indeterminate-domain 12-like 61 130 - -
Lele39g1121 513 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Lele39g1121 513 MobiDBLite consensus disorder prediction 228 336 - -
Lele39g1121 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 104 IPR013087 -
Lele39g1121 513 SUPERFAMILY beta-beta-alpha zinc fingers 81 179 IPR036236 -
Lele39g1121 513 MobiDBLite consensus disorder prediction 285 336 - -
Lele39g1121 513 Gene3D Classic Zinc Finger 61 130 - -
Lele39g1121 513 Gene3D Classic Zinc Finger 135 218 - -
Lele39g1121 513 MobiDBLite consensus disorder prediction 449 463 - -
Lele39g1121 513 FunFam protein indeterminate-domain 5, chloroplastic-like 137 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1121 Lele-ChrLele39 19722317 19724685 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1121 4 498 IDZ Gene Family AT1G55110 46.498 6.74e-127 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele39g1121 zf-C2H2_jaz 7.5e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0303 37 2564413 2566743 Lele39g1121 39 19722317 19724685 hybridization
Lele38g0286 38 2274702 2277183 Lele39g1121 39 19722317 19724685 hybridization