Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1117 ATGAACATCTCTCGAAACAACACCAACAACAACAATAACCAGGCTTGCGCTGCTTGTAAGTACCAACGTAAGAAATGCGCTCCTGACTGTATTCTCGCACCTTATTTCCCTCACTATCGCCAACGTCAATTCCTTAACGCCCATAAATTGTTCGGTGTCAAAAAGATCACCAAAATCATCAAACACCTTGACCCCCACGATAAGGATCAAGCCATGCGATCCATCATGTATCAATCCGACATGCGAGCTAACGACCCCGTAGGAGGTTGTTACAGACACATTCTAGAGCTTCAGGCTCAGATCAAATACCATCAAGCCGAGCTGGAGCTTGTTCTTCAACAGCTCGCAGTTTTCCAATCCCAAGCTCACCTTCATCATCATCATGATCATTTGAATTTTTATAATAACCCTAATAATAATATTTCACCAGTAGTAGCTCCCAGTACTCATCATTATCAATACCTTCAACAAGAGCCGTACATGATCGTTCATCCGCAGGAACATCAGATCAGTGATGTTTCTTTGCAGGATGATATTAGCAGTGCTTGTTGGGCTGTGCAGGATTCTGGGTCTTTGTCGTCTTTATCGTTACAGAACAAGAATACTGGGGATGATATTTATGTGGGTGATGAATTATATAATGATCAAAAGTCTTCGTCTACCTCTTTGCTTGCCATTCATTGTGACGATGAGAGGAATGAAATCGGTTTTGAACCTCAAGAATTAATGGATCGCAGTGATGAAGGGGTTTTGTTTAAGATAGAGAATGCTGCATTAAAAGCAAAGGCTGATTGCATTGAACAAGATCAAGATCATGATCTCAAAGAAAAATTGAATATGGTTCTTCACTGGGAAATAATCAACCTACTGGGTATAAATACTTTTATGGAATCGGAATATTTGCTTCTCAGAGAACTACAAGGTAATCTATAA 933 0.4019 MNISRNNTNNNNNQACAACKYQRKKCAPDCILAPYFPHYRQRQFLNAHKLFGVKKITKIIKHLDPHDKDQAMRSIMYQSDMRANDPVGGCYRHILELQAQIKYHQAELELVLQQLAVFQSQAHLHHHHDHLNFYNNPNNNISPVVAPSTHHYQYLQQEPYMIVHPQEHQISDVSLQDDISSACWAVQDSGSLSSLSLQNKNTGDDIYVGDELYNDQKSSSTSLLAIHCDDERNEIGFEPQELMDRSDEGVLFKIENAALKAKADCIEQDQDHDLKEKLNMVLHWEIINLLGINTFMESEYLLLRELQGNL 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1117 310 Pfam Lateral organ boundaries (LOB) domain 15 111 IPR004883 -
Lele39g1117 310 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 147 - -
Lele39g1117 310 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1117 Lele-ChrLele39 19691391 19694657 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1117 14 129 AS2 family AT3G13850 71.552 5.20e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lele39g1117 LOB 4.7e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0984 41 19272500 19273076 Lele39g1117 39 19691391 19694657 CCT
Lele42g0948 42 22199131 22202232 Lele39g1117 39 19691391 19694657 CCT
Lele37g0307 37 2582706 2585918 Lele39g1117 39 19691391 19694657 hybridization
Lele38g0293 38 2309876 2310460 Lele39g1117 39 19691391 19694657 hybridization