Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele39g1115 | ATGGCTTCGAGTGAGGTGGAAGGATTATCTCTTCCTATAGACGATTATGAGACCTTGCTTTCCACCACTGACGTTGAGCTGCTCAAGAGAGCATGGCGTAACGAGAAGGCAGCTCCTGAGATTCTTCTTTTTGAGACCGATTTGATTGGCCGCATTAGAGAACAGATCCAATTAATGGAAGAGACAGTGGAGGAGAAATCAGATGCTGGCATTGATCCCCTCTCAATATCTCTCTATCAGATGGACTTGGATAGAGCCCAGTTTTTACTAAGATCATACCTCCGGATTCGCATTCAGAAGATTGAAAAGTGTACTGAAGATCTAAAACAACACTTGGAGGATAGTGTTCTATCAAAGCTGCCCGAAAATTATCAATCTTTCCAGAAGCAATCTGTAATAAGTGAAGAGGATGACATGATTCCAGAAGCACAACTAGACACATTTGTTGTATGCAGAAGCAAAGAGTATCTCACAGGCATCCAGCTTGAGGAAGGACCAGTGGATGACAGGTCGATGCTGTTTGAGATGGAGCCAGGTGTCCTCTACTTCATATGTTACAAGTCTATAAAGGCACTTGTAGAGAGCGGCAAAATTGATCTTCTCTGA | 606 | 0.4323 | MASSEVEGLSLPIDDYETLLSTTDVELLKRAWRNEKAAPEILLFETDLIGRIREQIQLMEETVEEKSDAGIDPLSISLYQMDLDRAQFLLRSYLRIRIQKIEKCTEDLKQHLEDSVLSKLPENYQSFQKQSVISEEDDMIPEAQLDTFVVCRSKEYLTGIQLEEGPVDDRSMLFEMEPGVLYFICYKSIKALVESGKIDLL | 201 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele39g1115 | 201 | PIRSF | GINS_Sld5 | 102 | 201 | IPR008591 | GO:0006261 | |
| Lele39g1115 | 201 | PIRSF | GINS_Sld5 | 1 | 106 | IPR008591 | GO:0006261 | |
| Lele39g1115 | 201 | Pfam | GINS complex protein | 60 | 117 | IPR021151 | - | |
| Lele39g1115 | 201 | Pfam | DNA replication complex GINS protein SLD5 C-terminus | 144 | 201 | IPR031633 | - | |
| Lele39g1115 | 201 | PANTHER | SLD5 PROTEIN | 103 | 201 | IPR008591 | GO:0006261 | |
| Lele39g1115 | 201 | CDD | GINS_A_Sld5 | 24 | 103 | IPR038749 | - | |
| Lele39g1115 | 201 | SUPERFAMILY | GINS helical bundle-like | 21 | 131 | IPR036224 | - | |
| Lele39g1115 | 201 | Gene3D | - | 105 | 191 | - | - | |
| Lele39g1115 | 201 | Gene3D | - | 13 | 104 | - | - | |
| Lele39g1115 | 201 | SUPERFAMILY | PriA/YqbF domain | 145 | 201 | - | - | |
| Lele39g1115 | 201 | Coils | Coil | 49 | 69 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele39g1115 | Lele-ChrLele39 | 19685203 | 19687414 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele39g1115 | 1 | 139 | Core DNA Replication Machinery Family | AT5G49010 | 57.927 | 2.19e-56 | 175 |