Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1099 ATGATTCCCATATCTAAGGATGCTGTAAAACAAGGGCACGCAAACGCTGGTCAGGTTGAGGCAATGGAGACAAAAATTGAGCTTCTCCATGGAACAATTGAAGCCACCCTCTTCAATGCTACTCCTTATGCACCTGCATTTCCGTTCAATTGTATCCGGGCAAATGGGAAACCTGCATATGTGACCATCAAGCTAGGAAACAAGAAGGTAGCAAAGACAAGTCAAGAACGAGATCGTGTGTGGAATCAAACCTTTCAGATCCCATGTGCTCACCCAGCAGATTCAATTATCATCCTCACATTGAAAACATCATGCTCTATATTGGGGAGATTCCATATTCAGGCTCAGAAGTTACTGAAGGAAGAAAGTTTAATCAACGGTTTCTTCCCTCTCCACATGGAAAATGGAAAACCAAATCCTCAACTCAAGCTAAGGTTTCTATTGTGGTTCAAACCAGCAGGGCTTGAACCAAGTTGGGAAAAGCTGCTAAGAAATGGGGAATTTCATGGCTTAAGGGATGCCTCGTTTCCACAAAGGTCCAATTGTCAGGTCAAGCTTTACCACGATGCTCACCATTCTTTCACTTATCAACCTCCTTTTAATCATTGTGGACCTCCAAGAAGGCTATGGGAAGACGTGTATAAAGCCATTGAGGGTGCAAAGTACTTAATCTATATTGCAGGATGGTCCTTCAATCCTAAGATGGTTCTGGTCAGAGATCCTGAAACTGAAATCCCACATGCGAGAGGAGTAAAGCTTGGTGAGCTGTTAAAAAGGAAGGCAGAGGAAGGAGTGGCAGTAAGGGTGATGGTTTGGGATGATGAAACATCTTTGCCATTTATTAAGAACAAGGGTATGATGAATACCCATGATGAGGATGCTTTTGCATACTTCAAACATACAAAAGTTATATGCAGAAAATGTCCCAGATTACACCATAAGTTCCCCACATTATTTACCCACCATCAGAAGACTATAACTGTTGATGCCAAAGCACCGAAATCTGTGAATGATAGAGAAATTACAAGTTTTGTTGGTGGATTAGATTTATGCGATGGAAGGTACGACACAGAGCAGCATTCATTGTTTCAAACACTAAATAGCGAATCCCATTGTCATGATTTCTATCAGACAAGTATTCCAGGAGCTAGCCCTAATAAAGGAGGGCCGAGAGAGCCTTGGCATGATGCTCATGCTTGTGTTATAGGTGGTGCTGCTTGGGATGTGTTAACAAATTTCGAGCAAAGATGGACAAAGCAGTGTGATCCTTCCCTTTTAGTCCCTGCAAGTGCCTTAACAAACCTCATGCCCCAAACGTTTTCAAGCATTCCGGTTGAGAGGAATTGGAAAGTTCAAGTATATAGATCAATTGACCATATCTCTGCTTACCAATTGTTTAGGAAGTTTACTGTGGAAAGGAGCATCCATGATGCTTATGTTGAAGCAATCAGGCGCGCCGATAGGTTTATATACATTGAAAACCAGTATTTCATTGGAGGGTGCCATTTGTGGGACAAAGACAAGCATAGTGGAGGCAGAAATTTGATCCCCATTGAGATAGCACTCAAGGTGGTGAGTAAGATTAAAGCAAAGGAGAGGTTTGCAGTGTATATAGTGATTCCAATGTGGCCAGAAGGATTACCTGAAAGCGACACAGTTCAGGACATTCTGCATTGGACCAGAGAAACAATGACAATGATGTATAAGTTGATTGGAGAAGCAATACGAGAGAGTGGGGAAGCAGGGCACCCAAGAGACTACTTGAATTTCTTTTGCCTAGCAAATAGGGAACAGAAGGGAGAAGGGGAGTACATGCCAACTCATTCTCCTCATCATGAAACACATTATTGGAATGCCCAAAAGAGTAGAAGGTTCATGGTGTATGTCCACTCCAAGCTCATGATAGTGGACGACCTGTACATGTTGATTGGGTCAGCCAACGTGAACCAGAGATCCATGGATGGGCAAAGAGACACGGAGATAGCCATAGGTTGCTACCAATCGCAAGACGCGGATTCTAACAACCAAGCGATGAATCGAGGCGAGATTCACGCATACAGGATGTCACTGTGGTACGAGCACAGTACGTGCGCAGAGGAATGGTTGATGGAGCCAGAGAGTTTGGAATGCGTTCAAAAAATGCGATCCATCGGAGATCGAATGTGGAAAATCTACAGCGGCGAAGAGATTGTGGACATGGAAGGCGTTCATCTGGTGAGCTACCCTTTGAAGGTGATGCATGAAGGTTTGGTAGAAGATGTGACTGAGTGTGAGGGACGTTTTCCTGATACAGTGTGTCCAGTGAAGGGGAAGAGATCCAAGGTGTTGCCTCCTGTCTCCACTACTTAG 2349 0.4381 MIPISKDAVKQGHANAGQVEAMETKIELLHGTIEATLFNATPYAPAFPFNCIRANGKPAYVTIKLGNKKVAKTSQERDRVWNQTFQIPCAHPADSIIILTLKTSCSILGRFHIQAQKLLKEESLINGFFPLHMENGKPNPQLKLRFLLWFKPAGLEPSWEKLLRNGEFHGLRDASFPQRSNCQVKLYHDAHHSFTYQPPFNHCGPPRRLWEDVYKAIEGAKYLIYIAGWSFNPKMVLVRDPETEIPHARGVKLGELLKRKAEEGVAVRVMVWDDETSLPFIKNKGMMNTHDEDAFAYFKHTKVICRKCPRLHHKFPTLFTHHQKTITVDAKAPKSVNDREITSFVGGLDLCDGRYDTEQHSLFQTLNSESHCHDFYQTSIPGASPNKGGPREPWHDAHACVIGGAAWDVLTNFEQRWTKQCDPSLLVPASALTNLMPQTFSSIPVERNWKVQVYRSIDHISAYQLFRKFTVERSIHDAYVEAIRRADRFIYIENQYFIGGCHLWDKDKHSGGRNLIPIEIALKVVSKIKAKERFAVYIVIPMWPEGLPESDTVQDILHWTRETMTMMYKLIGEAIRESGEAGHPRDYLNFFCLANREQKGEGEYMPTHSPHHETHYWNAQKSRRFMVYVHSKLMIVDDLYMLIGSANVNQRSMDGQRDTEIAIGCYQSQDADSNNQAMNRGEIHAYRMSLWYEHSTCAEEWLMEPESLECVQKMRSIGDRMWKIYSGEEIVDMEGVHLVSYPLKVMHEGLVEDVTECEGRFPDTVCPVKGKRSKVLPPVSTT 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1099 782 SUPERFAMILY Phospholipase D/nuclease 163 444 - -
Lele39g1099 782 CDD PLDc_pPLD_like_1 206 368 - -
Lele39g1099 782 SUPERFAMILY Phospholipase D/nuclease 444 710 - -
Lele39g1099 782 Pfam Phospholipase D C terminal 700 771 IPR024632 -
Lele39g1099 782 Pfam Phospholipase D Active site motif 318 354 IPR001736 GO:0003824
Lele39g1099 782 Gene3D Endonuclease Chain A 438 687 - -
Lele39g1099 782 Gene3D C2 domain 48 150 IPR035892 -
Lele39g1099 782 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 625 652 IPR001736 GO:0003824
Lele39g1099 782 Gene3D Endonuclease Chain A 191 437 - -
Lele39g1099 782 Pfam C2 domain 59 131 IPR000008 -
Lele39g1099 782 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 29 146 IPR035892 -
Lele39g1099 782 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 317 354 IPR001736 GO:0003824
Lele39g1099 782 PIRSF PLD_plant 17 782 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lele39g1099 782 Pfam PLD-like domain 624 671 IPR025202 -
Lele39g1099 782 PANTHER PHOSPHOLIPASE D 25 764 IPR015679 -
Lele39g1099 782 SMART pld_4 625 652 IPR001736 GO:0003824
Lele39g1099 782 SMART pld_4 317 354 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1099 Lele-ChrLele39 19563599 19568913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1099 51 782 Phospholipase D Gene Family (Wang group) AT1G55180 63.320 0.0 978
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0969 41 19144441 19150516 Lele39g1099 39 19563599 19568913 CCT
Lele42g0938 42 22090142 22097287 Lele39g1099 39 19563599 19568913 CCT
Lele39g1099 39 19563599 19568913 Lele39g1099 39 19563599 19568913 ECH
Lele37g0324 37 2717727 2723140 Lele39g1099 39 19563599 19568913 hybridization
Lele38g0307 38 2419146 2421252 Lele39g1099 39 19563599 19568913 hybridization