Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1083 ATGGATGGTGTGAGTTGGGATGCCTCGCATGCTGTGGAGAACCTACCCATATTGTGGAGCAATATAGAACAACAAGAGCTTGAAGCAAGCTTAAATCCAAGCTTTCCTCTAATAGGTCATCATCATCTATATGCAGATTCTGGGAAAGGATTGATCAAAGAGCTGGTTCAATTATCAGAAGCTGATGAAGCAGAATTAGCAGCTACTACTACAAATTCAAAGACAAGTCTTCTGTCACAGCTTGTAGGTGGGCCCAGCTGCTGGGCTGGTGGTGGTGGATCTTACAGTATGAATAACGCATTTGGTAATTTTGATCCTCCTGCAGAATTCAACATGGCCCACCAACAACAACTGGTCAATAATCATAATAATAATGGCTCACAACATGGTGGTACCTTCTCTGCAGCTGAGTCACTAGATTGCTTGTTCTCAGATACCAATAGCAACACAGACACAACTTCTGTTGAAGATGATGGAGTCTCCACCATGATCTTACCAGATTGCAGAAGATCGAACTTATGGAGCTTTAGTAGTTATAATAACAATGGAGGAAGTGAATCTGAGAGTGCTACTAATGCTGATCATGAAACATTATCTCAGTGTTCTTCAGATCTTTATGCGAATCAAGGAATAATGAAAATTGCAGAATCCACCAAGACTGGTAAGTGTTCAAAAAGGAGCATTGAAGATGCCTTTGATCAATATCCCTACTTCAGCATTGAAGAAGGTGGGTCTAATTCAAGTTCTTCATTCAAGCTCATTAAGGAGATCAAGAACAACAACAATGATCCACCAAAACCCAAAAGACCAAGATGGGATTCTAAGATTCCAACTTCTTCAAACATCAATTTCAAGCAGCCCCATAATTCAACAACAACAACATCATCTTTCATGGAAGAACCAGAACCAGACGCCATAGCTCAGATGAAAGAGATGATATATAGGGCTGCAGCATTCAGGCCTGTGAATTTAGGAATGGAGGTGGTGGAGAAGCCAAAAAGGAAGAATTTGAAGATATCATCAGATCCTCAAACTGTGGCTGCAAGGCTGAGAAGGGAGAGAATAAGTGAAAGAATTAGGGTTTTGCAGAAACTGGTTCCTGGTGGAAGCAAGATGGACACTGCTTCAATGCTTGATGAAGCTGCAAATTACCTCAAGTTTCTAAGGTCACAAGTGAAAGCACTAGAAAGTCTAGGAAGCAAAGTTGAGGCCATGAATTGTCCTCCTACTAATATTGCCTTCTCTTTTAACCCTTCTTTTCCTACCATGCAGTTTAACCCTAGCTACCATCACATCCAACATTGA 1305 0.4107 MDGVSWDASHAVENLPILWSNIEQQELEASLNPSFPLIGHHHLYADSGKGLIKELVQLSEADEAELAATTTNSKTSLLSQLVGGPSCWAGGGGSYSMNNAFGNFDPPAEFNMAHQQQLVNNHNNNGSQHGGTFSAAESLDCLFSDTNSNTDTTSVEDDGVSTMILPDCRRSNLWSFSSYNNNGGSESESATNADHETLSQCSSDLYANQGIMKIAESTKTGKCSKRSIEDAFDQYPYFSIEEGGSNSSSSFKLIKEIKNNNNDPPKPKRPRWDSKIPTSSNINFKQPHNSTTTTSSFMEEPEPDAIAQMKEMIYRAAAFRPVNLGMEVVEKPKRKNLKISSDPQTVAARLRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGSKVEAMNCPPTNIAFSFNPSFPTMQFNPSYHHIQH 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1083 434 Coils Coil 378 398 - -
Lele39g1083 434 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 339 388 IPR011598 GO:0046983
Lele39g1083 434 MobiDBLite consensus disorder prediction 257 299 - -
Lele39g1083 434 Gene3D - 344 407 IPR036638 GO:0046983
Lele39g1083 434 MobiDBLite consensus disorder prediction 274 299 - -
Lele39g1083 434 MobiDBLite consensus disorder prediction 259 273 - -
Lele39g1083 434 Pfam Helix-loop-helix DNA-binding domain 349 388 IPR011598 GO:0046983
Lele39g1083 434 SMART finulus 345 394 IPR011598 GO:0046983
Lele39g1083 434 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 146 426 IPR045843 GO:0003700|GO:0006355
Lele39g1083 434 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 402 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1083 Lele-ChrLele39 19427918 19429222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1083 128 433 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.335 5.46e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele39g1083 HLH 4.4e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0452 43 3970114 3974005 Lele39g1083 39 19427918 19429222 CCT
Lele44g0442 44 3315561 3317656 Lele39g1083 39 19427918 19429222 CCT
Lele41g0943 41 18947521 18948132 Lele39g1083 39 19427918 19429222 CCT
Lele42g0912 42 21868968 21869579 Lele39g1083 39 19427918 19429222 CCT
Lele39g1083 39 19427918 19429222 Lele39g1083 39 19427918 19429222 ECH
Lele37g0341 37 2851341 2852666 Lele39g1083 39 19427918 19429222 hybridization
Lele38g0322 38 2539060 2540382 Lele39g1083 39 19427918 19429222 hybridization