Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1081 ATGGCGACACCTCCGATGGGACTGCCTGCCAACCCATTGTTCGACGGGGCCGCGCCGCCGCCCCCACAAGCTCCATGGACTGATATGACCGGAATATGCTTCCGAGACCAGCTTTGGCTCAACACTTACCCTCTCGATCGAAACCTAGTGTTCGATTATTTCGCCTTATCCCCCTTCTACGACTGGACCTGCAACAATGAACAGCTTCGTATGCGCTCAATCCATCCTCTTGATCCCTCTCAATTATCGAAAATGACAGGCATAGAGTATATGCTCAGTGAAGTCATGGAACCGCACCTTTTTGTTATGCGCAAGCAAAAGAGAGATGGCCCCGAGAAAGTTACACCCATGCTAGCTTATTACATCTTGGATGGCTCAATATACCAAGCACCACAGCTATGCAATGTTTTTGCTGCTCGAATTGGAAGGGCACTATATCATATACAGAAGGCTTTCAGTACAGCTGCATCAAAGTTGGAGAAGATAGGATATGTTGATTCTGAAAATGAGCCTGCAGTGCCAGAAGCAAAGGCTGGTAAAGAGTCAATTGACATAAAGGAAGTTATGCGGGTGGATCACATTCTTGCATCCCTACAGCGTAAGCTACCTCCAGCCCCACCTCCACCACCATTTCCTGAAGGTTACAATCCGCCTCCAACTGCGGAAACTGAGAAAGGACCTGAAGGTCAAGAAGCAGGAGAGTCACAAGCTCCTACTATTGATCCTATAATTGATCAAGGACCTGCAAAGAGGATGAAAGTTTGA 765 0.4784 MATPPMGLPANPLFDGAAPPPPQAPWTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDPSQLSKMTGIEYMLSEVMEPHLFVMRKQKRDGPEKVTPMLAYYILDGSIYQAPQLCNVFAARIGRALYHIQKAFSTAASKLEKIGYVDSENEPAVPEAKAGKESIDIKEVMRVDHILASLQRKLPPAPPPPPFPEGYNPPPTAETEKGPEGQEAGESQAPTIDPIIDQGPAKRMKV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1081 254 FunFam Mediator of RNA polymerase II transcription subunit 6 26 155 - -
Lele39g1081 254 Gene3D Mediator complex, subunit Med6 26 155 IPR038566 -
Lele39g1081 254 MobiDBLite consensus disorder prediction 1 21 - -
Lele39g1081 254 Pfam MED6 mediator sub complex component 32 157 IPR007018 GO:0003712|GO:0006357|GO:0016592
Lele39g1081 254 MobiDBLite consensus disorder prediction 199 254 - -
Lele39g1081 254 PANTHER MED-6-RELATED 11 253 IPR007018 GO:0003712|GO:0006357|GO:0016592
Lele39g1081 254 MobiDBLite consensus disorder prediction 201 217 - -
Lele39g1081 254 PIRSF MED6_meta/plant 17 254 IPR016820 GO:0003712|GO:0006357|GO:0016592
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1081 Lele-ChrLele39 19413756 19416585 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Lele39g1081 Med6 5.4e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1081 39 19413756 19416585 Lele39g1081 39 19413756 19416585 ECH
Lele37g0344 37 2866503 2869340 Lele39g1081 39 19413756 19416585 hybridization
Lele38g0328 38 2595120 2604913 Lele39g1081 39 19413756 19416585 hybridization