Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1073 ATGGATGTGAGGTCAAGAAATGAGGAGGTGTCTCCTCAGCTGCTGGATTTGATCTCAAGGGATAAAAAAGAATGGCACATGAGCGTCACTGACGAAGCAGAAGGAAGAACCCAAAACAACAAGAAGAACAAGGGCAAGTCTTGTTGTGAGGAGAGAAAACTTGAGCTCAGACTTGCTCCACCTGGTGAAGATGATGATTCTCTACTCTCTCTTGGTTACTTCTCTCAGCAAACCCAGAAAATCTCTAACTCTCCATGGCCTTCTTCTCCTTCTCCTTCTAAAGCTTCATTTCTTCAGTTCCCACCAGAAAAGAAAGCTTTCTCATCATCTTCTTCTGCTAATCCAGCTGTCCCCTCTAATAATATATCTCATAAAAGAACTGCTCCTGGGCCTGTAGTGGGTTGGCCTCCAATTCGTTCATTTAGGAAGAACCTTGCAAGCAACAACAACAGCATTTCTAAGACAGCTAATGAGACACAACAGCGGCATGATGTGGCAGACCAGGTTGCCGGGAAGAAACCTGTTGTTGACAACGTTGGTAGTAAAGGTTTGTTTGTGAAGATCAACATGGATGGAGTTCCTATAGGGAGGAAAGTGGACCTTAACGCTTATGACTGCTATGAAAAACTCTGCTCTGCAGTTGATCAACTCTTCAGATGCCTCCTCGCTGCTCAAAGAGATTCCTGTGCTGGAGGAATCAAGAACAAAGAAGAGGAAGAAGAAAAAGCTATAACAGGTTTATTGGATGGAAGTGGGGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTCGTTGGGGACGTGCCATGGCACATGTTCGCATCAACTGTGAAGAGGCTGCGTGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCTTGGTAACAAGCAAGGCAAGAAAACCACTTGA 918 0.4444 MDVRSRNEEVSPQLLDLISRDKKEWHMSVTDEAEGRTQNNKKNKGKSCCEERKLELRLAPPGEDDDSLLSLGYFSQQTQKISNSPWPSSPSPSKASFLQFPPEKKAFSSSSSANPAVPSNNISHKRTAPGPVVGWPPIRSFRKNLASNNNSISKTANETQQRHDVADQVAGKKPVVDNVGSKGLFVKINMDGVPIGRKVDLNAYDCYEKLCSAVDQLFRCLLAAQRDSCAGGIKNKEEEEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFASTVKRLRVLKSSELSAFTLGNKQGKKTT 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1073 305 Gene3D - 178 299 - -
Lele39g1073 305 MobiDBLite consensus disorder prediction 79 96 - -
Lele39g1073 305 SUPERFAMILY CAD & PB1 domains 177 285 - -
Lele39g1073 305 MobiDBLite consensus disorder prediction 103 134 - -
Lele39g1073 305 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 51 291 IPR003311 GO:0005634|GO:0006355
Lele39g1073 305 MobiDBLite consensus disorder prediction 20 50 - -
Lele39g1073 305 FunFam Auxin-responsive protein 178 300 - -
Lele39g1073 305 Pfam AUX/IAA family 54 293 IPR033389 -
Lele39g1073 305 ProSiteProfiles PB1 domain profile. 183 288 IPR000270 GO:0005515
Lele39g1073 305 MobiDBLite consensus disorder prediction 103 126 - -
Lele39g1073 305 MobiDBLite consensus disorder prediction 79 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1073 Lele-ChrLele39 19339271 19342176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1073 187 299 B3 DNA Binding Superfamily AT4G23980 34.513 6.51e-15 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele39g1073 AUX_IAA 6.3e-67 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1073 39 19339271 19342176 Lele40g0316 40 2549403 2550937 ECH
Lele39g1073 39 19339271 19342176 Lele39g1073 39 19339271 19342176 ECH
Lele37g0353 37 2938337 2940003 Lele39g1073 39 19339271 19342176 hybridization
Lele38g0336 38 2675411 2678277 Lele39g1073 39 19339271 19342176 hybridization