Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1065 ATGCCGGTACTGCGTAGTGGAGTGCGCAGGGGCCGGGCAGCAGCAAAGAAACAGAAGCGGCAGCAACCTAATCCATTGATCGAGGAAGGGGAAGCAATTGCAGCAAGAACAAGGGGGAGGCGGGCGGCGGCGGCGGCGGCTGAGCCTAAGACTAACAAACAACAGAAGCAGGAGGTGGTCGATGAGAAGGTAGCTGTACCGGTGAAGGAGGACGAGATCAAGGGTGTGAACGAAGCTATTCGTGTTGGTGAAGCTGCTGCTGGTGGAGAGGAGAGAGAAGAGGTTGGGGAGAAGCAGATGGATGACTATGATAGTGGAGCCCGGAGCAATGATAAGGGCCATGCCGGTGAAGATGAGGGGAGCACCGCTCCGCTACCTGAGAAGGTTCAAGTTGGTGGTTCCCCTATGTATAAAATTGAGAGAAAACTGGGTAAGGGTGGTTTTGGACAAGTATATGTGGGTCGACGAATTTCTGTAAATATGAACGAGAGGACTGGACCTGGAGCTGTAGAGGTTGCCCTAAAATTTGAGCATAGAAATAGTAAAGGATGTAACTATGGACCGCCATATGAGTGGCAAGTGTACAACAATCTCGGTGGAAGTCATGGTGTGCCACGGGTACACTATAAGGGAAGGCAAGGTGACTATTATATCATGGTTATGGATATGTTGGGACCTAGTCTGTGGGATGTTTGGAATAATAACTCTCACACAATGTCCACTGAAATGGTTGCTTGTATTGCCATTGAAGCAATATCTATATTGGAAAAGATGCACTCTCGAGGGTTTGTGCATGGGGATGTGAAGCCTGAAAATTTTCTGCTTGGTCCTCCCGGGACCCCTGATGAAAAGAAGCTGTTTCTTGTTGATCTTGGATTAGCTACTAGATGGAGGGATAGTACAACAGGTATGCATGTGGATTATGACCAACGCCCGGATGTTTTCAGGGGTACTGTTCGCTATGCTAGTGTGCATGCACACTTGGGAAGAACAGGCAGCAGGAGGGATGACCTGGAATCACTTGCTTACACATTGATTTTCCTTCTTCGAGGTCGTCTCCCTTGGCAGGGGTATCAGGGAGAGAACAAAGTGTTTCTTGTTTGCAAGAAGAAGATGGGAACTTCTCCAGAGAGCCTATGTTGCTTCTGCCCCCAGCCTTTTAGACAGTTTGTTGAACATGTGGTGAACTTGAAGTTCGATGAAGATCCTAACTATGCAAAATATATTTCTCTTTTCGATGGCATAGTTGGTCCAAATCCAGATATTAGGCCAATTAATACAGAAGGTGCACAAAAGCTCATTGGTCATAAGAGAGGTCGGTTGGCCATGGAAGAAGAGGATGATGAACAACCTAAAAAGAAGATACGCATGGGTATGCCAGCAACACAATGGATAAGTGTTTACAATGCTCGCAGACCAATGAAGCAAAGATATCATTACAATGTGGCAGATACAAGGCTGTCCCAGCACATTGAGAAAGGAAATGAGGATGGGTTATATATTAGCTGCGTGGCTTCATTTCAGAACCTGTGGGCCCTAATCATGGATGCAGGAACGGGTTTTACTGCCCAGGTTTATGAACTCTCTCCCTATTTTCTCCACAAGGAATGGATAATGGATCAGTGGGAAAAAAATTACTATATAAGTGCAATAGCTGGAGCTACAAATGGGAGTTCGTTAGTAGTGATGTCTAAGGGCACACAGTTTGTACAGCAATCCTACAAAGTGAGTGATTCATTTCCATTCAAGTGGATAAACAAAAAATGGAGGGAGGGCTTTTATGTCACTGCAATGGCCACTGCGGGTAGCAGATGGGCAGTTGTTATGTCTCGTGGGGCAGGATTTTCTGATCAGGTGGTTGAACTAGATTTCCTTTATCCCAGTGAAGGGATTCACAAACGATGGGATTATGGATACCGTATCACAGCAACCGCAGCAACTTGGGATCAAGCTGCATTTGTTCTCAGTGTGCCTAGGAGAAAACCTGCGGATGAAACACAGGAAACGCTTAGAACTTCGTCTTTTCCTAGTGTACATGTCAAGGAGAAGTGGGCAAAGAACCTGTATATTGCATCTATTTGCTATGGAAGAACAGTTTCATGA 2103 0.4612 MPVLRSGVRRGRAAAKKQKRQQPNPLIEEGEAIAARTRGRRAAAAAAEPKTNKQQKQEVVDEKVAVPVKEDEIKGVNEAIRVGEAAAGGEEREEVGEKQMDDYDSGARSNDKGHAGEDEGSTAPLPEKVQVGGSPMYKIERKLGKGGFGQVYVGRRISVNMNERTGPGAVEVALKFEHRNSKGCNYGPPYEWQVYNNLGGSHGVPRVHYKGRQGDYYIMVMDMLGPSLWDVWNNNSHTMSTEMVACIAIEAISILEKMHSRGFVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATRWRDSTTGMHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKVFLVCKKKMGTSPESLCCFCPQPFRQFVEHVVNLKFDEDPNYAKYISLFDGIVGPNPDIRPINTEGAQKLIGHKRGRLAMEEEDDEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADTRLSQHIEKGNEDGLYISCVASFQNLWALIMDAGTGFTAQVYELSPYFLHKEWIMDQWEKNYYISAIAGATNGSSLVVMSKGTQFVQQSYKVSDSFPFKWINKKWREGFYVTAMATAGSRWAVVMSRGAGFSDQVVELDFLYPSEGIHKRWDYGYRITATAATWDQAAFVLSVPRRKPADETQETLRTSSFPSVHVKEKWAKNLYIASICYGRTVS 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1065 700 FunFam casein kinase 1-like protein HD16 110 456 - -
Lele39g1065 700 MobiDBLite consensus disorder prediction 1 60 - -
Lele39g1065 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Lele39g1065 700 Pfam Protein kinase domain 137 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g1065 700 MobiDBLite consensus disorder prediction 84 131 - -
Lele39g1065 700 CDD STKc_CK1 136 412 - -
Lele39g1065 700 MobiDBLite consensus disorder prediction 85 118 - -
Lele39g1065 700 ProSitePatterns Protein kinases ATP-binding region signature. 143 175 IPR017441 GO:0005524
Lele39g1065 700 SUPERFAMILY Protein kinase-like (PK-like) 137 416 IPR011009 -
Lele39g1065 700 PANTHER CASEIN KINASE-RELATED 131 664 - -
Lele39g1065 700 SMART serkin_6 137 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g1065 700 ProSiteProfiles Protein kinase domain profile. 137 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g1065 700 Gene3D Transferase(Phosphotransferase) domain 1 103 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1065 Lele-ChrLele39 19244519 19249247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1065 231 412 MAP Kinase Kinase Kinase AT5G50180 26.316 5.84e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Lele39g1065 Pkinase 2.2e-17 CL0016